LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-487E13.1
hsa-miR-155-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512516
Biotype: lincRNA
Gene id: ENSG00000249008
Gene Name: RP11-487E13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-201
0.031
7
RP11-231E19.1
hsa-miR-155-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
737-751
0.020
1
6mer
32-52
0.007
1
6mer
92-114
0.004
1
XLOC_002505
hsa-miR-155-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004599
Biotype: transcript isomorph
Gene id: XLOC_002505
Gene Name: XLOC_002505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-143
0.027
0
6mer
23-48
0.004
0
RP11-152L7.2
hsa-miR-155-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456026
Biotype: lincRNA
Gene id: ENSG00000232100
Gene Name: RP11-152L7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1690-1711
0.027
1
6mer
477-500
0.004
0
XLOC_001464
hsa-miR-155-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003671
Biotype: transcript isomorph
Gene id: XLOC_001464
Gene Name: XLOC_001464
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1184-1204
0.031
1
LOC286437
hsa-miR-155-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_039980.1
Biotype: sense
Gene id: NR_039980.1 (gene)
Gene Name: LOC286437
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1390-1409
0.015
1
6mer
2127-2141
0.009
1
6mer
1937-1959
0.006
1
LOC100506639
hsa-miR-155-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1162-1180
0.031
1
NR2F2-AS1
hsa-miR-155-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620029
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-545
0.031
0
LINC01094
hsa-miR-155-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512322
Biotype: lincRNA
Gene id: ENSG00000251442
Gene Name: LINC01094
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1317-1337
0.031
1
XXyac-YX155B6.5
hsa-miR-155-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595668
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-86
0.027
2
6mer
359-378
0.004
1
RP11-321A17.5
hsa-miR-155-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581964
Biotype: antisense
Gene id: ENSG00000263613
Gene Name: RP11-321A17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-471
0.031
6
XLOC_004961
hsa-miR-155-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009756
Biotype: transcript isomorph
Gene id: XLOC_004961
Gene Name: XLOC_004961
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1589-1612
0.025
0
6mer
664-689
0.003
1
6mer
645-670
0.003
1
CTB-113D17.1
hsa-miR-155-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608972
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-263
0.031
0
XLOC_008528
hsa-miR-155-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3905-3921
0.008
1
7mer
2089-2113
0.005
0
6mer
3741-3768
0.005
0
6mer
3349-3373
0.004
1
6mer
1008-1032
0.002
1
6mer
459-485
0.002
Not Conserved
6mer
1370-1396
0.002
0
6mer
2192-2214
0.002
1
HP09025
hsa-miR-155-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592718
Biotype: lincRNA
Gene id: ENSG00000267719
Gene Name: HP09025
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3561-3583
0.019
1
7mer
408-432
0.012
1
RP13-348B13.2
hsa-miR-155-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420327
Biotype: lincRNA
Gene id: ENSG00000225012
Gene Name: RP13-348B13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-250
0.022
4
6mer
127-143
0.009
5
MGC16025
hsa-miR-155-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026664.1
Biotype: sense
Gene id: NR_026664.1 (gene)
Gene Name: MGC16025
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
927-949
0.030
1
XLOC_008083
hsa-miR-155-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017270
Biotype: transcript isomorph
Gene id: XLOC_008083
Gene Name: XLOC_008083
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-99
0.030
1
XLOC_008737
hsa-miR-155-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018445
Biotype: transcript isomorph
Gene id: XLOC_008737
Gene Name: XLOC_008737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-121
0.030
1
XLOC_012880
hsa-miR-155-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026559
Biotype: transcript isomorph
Gene id: XLOC_012880
Gene Name: XLOC_012880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
315-337
0.030
1
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