LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-370I10.6
hsa-miR-155-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548257
Biotype: antisense
Gene id: ENSG00000257735
Gene Name: RP11-370I10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-56
0.032
5
RP11-25I9.3
hsa-miR-155-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000366160
Biotype: pseudogene
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1625-1636
0.025
3
6mer
202-217
0.006
2
RP11-468E2.11
hsa-miR-155-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619226
Biotype: sense_intronic
Gene id: ENSG00000278784
Gene Name: RP11-468E2.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-81
0.032
1
RP11-25I9.3
hsa-miR-155-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000615020
Biotype: lincRNA
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1628-1639
0.025
3
6mer
202-217
0.006
2
LINC01094
hsa-miR-155-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503539
Biotype: lincRNA
Gene id: ENSG00000251442
Gene Name: LINC01094
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1444-1464
0.031
1
XLOC_013034
hsa-miR-155-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026983
Biotype: transcript isomorph
Gene id: XLOC_013034
Gene Name: XLOC_013034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-69
0.031
10
RP11-324D17.1
hsa-miR-155-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561336
Biotype: lincRNA
Gene id: ENSG00000259517
Gene Name: RP11-324D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-15
0.031
2
AC068039.4
hsa-miR-155-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-103
0.031
0
XLOC_006794
hsa-miR-155-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014698
Biotype: transcript isomorph
Gene id: XLOC_006794
Gene Name: XLOC_006794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1346-1367
0.024
1
6mer
826-842
0.007
1
CTD-2354A18.1
hsa-miR-155-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577634
Biotype: retained_intron
Gene id: ENSG00000261780
Gene Name: CTD-2354A18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-44
0.018
1
7mer
555-581
0.013
0
XLOC_010288
hsa-miR-155-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2128-2151
0.025
0
6mer
2042-2055
0.006
0
MALAT1
hsa-miR-155-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508832
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
229-252
0.015
2
6mer
1483-1500
0.014
6
6mer
353-370
0.003
0
RP11-667M19.2
hsa-miR-155-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000543486
Biotype: antisense
Gene id: ENSG00000256603
Gene Name: RP11-667M19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-525
0.031
1
XLOC_011334
hsa-miR-155-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023268
Biotype: transcript isomorph
Gene id: XLOC_011334
Gene Name: XLOC_011334
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1430-1450
0.026
0
6mer
1718-1739
0.005
4
RP11-384J4.1
hsa-miR-155-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548170
Biotype: lincRNA
Gene id: ENSG00000257612
Gene Name: RP11-384J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
776-802
0.031
0
XXyac-YX155B6.5
hsa-miR-155-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608244
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-42
0.031
2
RP1-167G20.2
hsa-miR-155-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513041
Biotype: antisense
Gene id: ENSG00000249737
Gene Name: RP1-167G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-176
0.031
5
AQP4-AS1
hsa-miR-155-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568797
Biotype: antisense
Gene id: ENSG00000260372
Gene Name: AQP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1609-1627
0.013
4
6mer
2214-2227
0.012
8
6mer
2045-2071
0.004
1
6mer
652-669
0.003
Not Conserved
PWAR1
hsa-miR-155-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022009.1
Biotype: lincRNA
Gene id: NR_022009.1 (gene)
Gene Name: PWAR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2247-2271
0.029
2
6mer
1308-1333
0.002
0
FAM182B
hsa-miR-155-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026714.2
Biotype: sense
Gene id: NR_026714.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-404
0.023
0
7mer
4320-4342
0.008
Not Conserved
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