LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-215H22.1
hsa-miR-155-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-554
0.027
2
7mer
1077-1094
0.007
2
AC008277.1
hsa-miR-155-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594921
Biotype: antisense
Gene id: ENSG00000223642
Gene Name: AC008277.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
911-936
0.021
0
7mer
286-309
0.013
Not Conserved
RP11-222G7.2
hsa-miR-155-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608199
Biotype: lincRNA
Gene id: ENSG00000272748
Gene Name: RP11-222G7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-475
0.034
1
RP11-49K24.8
hsa-miR-155-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591183
Biotype: antisense
Gene id: ENSG00000267724
Gene Name: RP11-49K24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-477
0.024
2
6mer
1536-1550
0.011
9
XLOC_003417
hsa-miR-155-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007952
Biotype: transcript isomorph
Gene id: XLOC_003417
Gene Name: XLOC_003417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
528-545
0.020
2
8mer
713-728
0.014
Not Conserved
KIAA0087
hsa-miR-155-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-89
0.029
9
6mer
2572-2583
0.005
9
LINC00924
hsa-miR-155-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556053
Biotype: lincRNA
Gene id: ENSG00000259134
Gene Name: LINC00924
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
437-460
0.011
14
7mer
923-946
0.008
6
6mer
531-551
0.008
14
6mer
454-480
0.008
12
RP11-498E2.8
hsa-miR-155-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602692
Biotype: lincRNA
Gene id: ENSG00000270102
Gene Name: RP11-498E2.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-449
0.034
1
CYP51A1-AS1
hsa-miR-155-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453068
Biotype: antisense
Gene id: ENSG00000188693
Gene Name: CYP51A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2929-2951
0.028
3
6mer
2463-2476
0.005
1
RP11-180N14.1
hsa-miR-155-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606582
Biotype: lincRNA
Gene id: ENSG00000272511
Gene Name: RP11-180N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1540-1567
0.023
2
7mer
1313-1332
0.008
1
6mer
872-893
0.003
1
RP11-342A23.2
hsa-miR-155-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616099
Biotype: sense_intronic
Gene id: ENSG00000274128
Gene Name: RP11-342A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-387
0.026
1
6mer
205-226
0.007
1
RP11-452H21.1
hsa-miR-155-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534168
Biotype: antisense
Gene id: ENSG00000254420
Gene Name: RP11-452H21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-175
0.027
2
6mer
399-412
0.007
1
C6orf123
hsa-miR-155-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000366822
Biotype: lincRNA
Gene id: ENSG00000146521
Gene Name: C6orf123
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-170
0.019
0
7mer
428-443
0.015
1
RP1-309F20.3
hsa-miR-155-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441270
Biotype: antisense
Gene id: ENSG00000225806
Gene Name: RP1-309F20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-407
0.026
3
6mer
38-55
0.007
3
FLJ34503
hsa-miR-155-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000314481
Biotype: antisense
Gene id: ENSG00000175967
Gene Name: FLJ34503
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1239-1263
0.033
3
XLOC_002307
hsa-miR-155-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004435
Biotype: transcript isomorph
Gene id: XLOC_002307
Gene Name: XLOC_002307
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-28
0.033
3
SGMS1-AS1
hsa-miR-155-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8685-8702
0.008
1
7mer
6065-6082
0.007
1
7mer
11458-11476
0.006
1
7mer
2998-3011
0.004
2
6mer
11635-11656
0.003
1
6mer
4492-4512
0.002
4
6mer
8149-8169
0.002
3
6mer
7902-7917
0.002
2
XLOC_010017
hsa-miR-155-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-263
0.033
0
AC104654.1
hsa-miR-155-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418836
Biotype: lincRNA
Gene id: ENSG00000214691
Gene Name: AC104654.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-418
0.029
1
6mer
469-492
0.005
0
LINC00615
hsa-miR-155-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546725
Biotype: lincRNA
Gene id: ENSG00000196243
Gene Name: LINC00615
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1284-1299
0.019
0
7mer
1138-1163
0.014
1
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