LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008046
hsa-miR-155-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4511-4537
0.016
1
8mer
3526-3548
0.016
4
6mer
4045-4069
0.003
1
RP11-522B15.3
hsa-miR-155-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558499
Biotype: lincRNA
Gene id: ENSG00000259275
Gene Name: RP11-522B15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4021-4033
0.020
2
6mer
179-200
0.005
1
6mer
4588-4602
0.004
0
6mer
1579-1596
0.002
4
6mer
3881-3903
0.002
0
6mer
2918-2940
0.001
0
XXyac-YX155B6.5
hsa-miR-155-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000594189
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-86
0.030
2
6mer
185-208
0.005
0
RP11-10E18.7
hsa-miR-155-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000622881
Biotype: sense_intronic
Gene id: ENSG00000276809
Gene Name: RP11-10E18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-282
0.019
1
6mer
134-155
0.012
2
6mer
364-389
0.004
0
DLX6-AS1
hsa-miR-155-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14126-14145
0.016
2
6mer
854-870
0.007
10
7mer
8266-8271
0.005
3
6mer
1193-1212
0.003
3
6mer
10785-10801
0.002
2
6mer
12451-12473
0.002
1
6mer
6478-6503
0.002
Not Conserved
RP11-435J9.2
hsa-miR-155-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611703
Biotype: lincRNA
Gene id: ENSG00000274340
Gene Name: RP11-435J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
668-688
0.025
1
7mer
896-916
0.011
0
RP11-2C24.4
hsa-miR-155-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000483578
Biotype: processed_transcript
Gene id: ENSG00000260899
Gene Name: RP11-2C24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-158
0.035
8
RP4-798A10.2
hsa-miR-155-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457898
Biotype: lincRNA
Gene id: ENSG00000226029
Gene Name: RP4-798A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-373
0.022
0
7mer
315-324
0.013
1
THRB-AS1
hsa-miR-155-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594183
Biotype: lincRNA
Gene id: ENSG00000228791
Gene Name: THRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-301
0.035
1
RP11-218M22.1
hsa-miR-155-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318291
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1849-1859
0.031
2
7mer
783-794
0.003
0
RP11-342M1.3
hsa-miR-155-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414798
Biotype: antisense
Gene id: ENSG00000228192
Gene Name: RP11-342M1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-207
0.035
Not Conserved
RP11-24P4.1
hsa-miR-155-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519996
Biotype: lincRNA
Gene id: ENSG00000254334
Gene Name: RP11-24P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
944-970
0.015
3
7mer
1485-1509
0.015
1
6mer
812-835
0.005
5
AF131215.3
hsa-miR-155-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526648
Biotype: sense_intronic
Gene id: ENSG00000254936
Gene Name: AF131215.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
823-846
0.035
2
RP11-68L18.1
hsa-miR-155-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501194
Biotype: antisense
Gene id: ENSG00000246792
Gene Name: RP11-68L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3213-3227
0.027
1
7mer
2755-2774
0.005
0
6mer
2306-2332
0.002
0
LINC01450
hsa-miR-155-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443406
Biotype: lincRNA
Gene id: ENSG00000232458
Gene Name: LINC01450
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
315-336
0.023
1
8mer
2075-2096
0.012
1
SOS1-IT1
hsa-miR-155-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594472
Biotype: sense_intronic
Gene id: ENSG00000229692
Gene Name: SOS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
206-223
0.034
0
CTA-929C8.9
hsa-miR-155-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6178-6202
0.011
0
8mer
23006-23025
0.006
1
8mer
3673-3694
0.005
1
6mer
16630-16648
0.002
1
6mer
1231-1251
0.002
1
6mer
2108-2127
0.002
0
6mer
11452-11471
0.002
0
6mer
11825-11845
0.002
1
6mer
15463-15484
0.001
0
6mer
8619-8638
0.001
0
RP11-478K15.6
hsa-miR-155-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-348
0.021
1
7mer
777-797
0.014
5
RP11-561E1.1
hsa-miR-155-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520256
Biotype: antisense
Gene id: ENSG00000253643
Gene Name: RP11-561E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-481
0.034
5
XLOC_003730
hsa-miR-155-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008287
Biotype: transcript isomorph
Gene id: XLOC_003730
Gene Name: XLOC_003730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-352
0.034
1
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