LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-3N13.2
hsa-miR-155-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520696
Biotype: lincRNA
Gene id: ENSG00000254043
Gene Name: RP11-3N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-588
0.029
1
6mer
85-109
0.009
3
RP11-4B14.3
hsa-miR-155-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470817
Biotype: lincRNA
Gene id: ENSG00000239381
Gene Name: RP11-4B14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-484
0.038
2
RP11-363N22.3
hsa-miR-155-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000615314
Biotype: retained_intron
Gene id: ENSG00000205740
Gene Name: RP11-363N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-146
0.021
1
6mer
18-36
0.008
2
6mer
88-103
0.007
1
6mer
1112-1130
0.001
Not Conserved
RP11-462L8.1
hsa-miR-155-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414157
Biotype: lincRNA
Gene id: ENSG00000229656
Gene Name: RP11-462L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1002-1024
0.038
1
AC011747.4
hsa-miR-155-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436187
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-290
0.038
1
RP11-126H7.4
hsa-miR-155-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000372387
Biotype: antisense
Gene id: ENSG00000204049
Gene Name: RP11-126H7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-95
0.038
1
RP11-541F9.1
hsa-miR-155-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432083
Biotype: lincRNA
Gene id: ENSG00000223344
Gene Name: RP11-541F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-415
0.038
1
LINC00657
hsa-miR-155-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000565493
Biotype: lincRNA
Gene id: ENSG00000260032
Gene Name: LINC00657
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-428
0.020
3
6mer
520-547
0.006
3
7mer
1883-1894
0.006
2
7mer
3109-3121
0.006
4
LINC00401
hsa-miR-155-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000431686
Biotype: lincRNA
Gene id: ENSG00000235221
Gene Name: LINC00401
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-664
0.032
0
6mer
336-352
0.006
2
XLOC_010140
hsa-miR-155-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020857
Biotype: transcript isomorph
Gene id: XLOC_010140
Gene Name: XLOC_010140
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-257
0.037
1
LHFPL3-AS1
hsa-miR-155-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449764
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
693-711
0.018
5
7mer
119-144
0.013
1
6mer
989-1012
0.006
1
MGC32805
hsa-miR-155-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510972
Biotype: antisense
Gene id: ENSG00000250328
Gene Name: MGC32805
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1369-1391
0.037
0
LOC100129316
hsa-miR-155-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033912.1
Biotype: lincRNA
Gene id: NR_033912.1 (gene)
Gene Name: LOC100129316
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-78
0.035
2
6mer
2879-2899
0.002
1
LINC01094
hsa-miR-155-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504675
Biotype: lincRNA
Gene id: ENSG00000251442
Gene Name: LINC01094
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1514-1534
0.037
1
LARGE-AS1
hsa-miR-155-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438159
Biotype: antisense
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2038-2055
0.017
1
8mer
1408-1422
0.014
3
6mer
1576-1594
0.007
8
RP11-52L5.6
hsa-miR-155-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607269
Biotype: antisense
Gene id: ENSG00000271776
Gene Name: RP11-52L5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3250-3273
0.026
5
7mer
1401-1422
0.008
3
6mer
808-818
0.003
1
RP11-541F9.1
hsa-miR-155-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428569
Biotype: lincRNA
Gene id: ENSG00000223344
Gene Name: RP11-541F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-359
0.037
1
CTD-3222D19.5
hsa-miR-155-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593779
Biotype: sense_intronic
Gene id: ENSG00000269578
Gene Name: CTD-3222D19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-49
0.025
1
7mer
834-844
0.008
1
6mer
178-198
0.004
1
XLOC_010463
hsa-miR-155-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1360-1386
0.013
0
7mer
8702-8717
0.009
1
7mer
11133-11158
0.005
1
6mer
2167-2186
0.003
4
6mer
8010-8021
0.002
1
6mer
3822-3838
0.002
2
6mer
5102-5119
0.002
0
6mer
5443-5467
0.002
1
XLOC_013575
hsa-miR-155-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028231
Biotype: transcript isomorph
Gene id: XLOC_013575
Gene Name: XLOC_013575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
835-853
0.037
1
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