LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-543P15.3
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619492
Biotype: sense_intronic
Gene id: ENSG00000275850
Gene Name: RP11-543P15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-512
0.007
6
9mer
2172-2188
0.005
Not Conserved
7mer
2167-2184
0.004
0
7mer
1253-1266
0.003
2
6mer
197-218
0.003
1
6mer
2083-2094
0.002
0
6mer
651-666
0.001
0
RP11-572C15.5
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110017.1
Biotype: sense
Gene id: NR_110017.1 (gene)
Gene Name: RP11-572C15.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1865-1884
0.014
0
6mer
1796-1817
0.004
1
6mer
53-62
0.004
1
6mer
137-151
0.003
1
LINC00518
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000472178
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
254-277
0.011
0
7mer
790-815
0.009
1
6mer
805-825
0.004
2
RP11-244O19.1
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000567068
Biotype: sense_overlapping
Gene id: ENSG00000261534
Gene Name: RP11-244O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3460-3483
0.007
2
6mer
3628-3641
0.003
1
6mer
1202-1226
0.003
4
7mer
2513-2538
0.002
0
7mer
3138-3156
0.002
0
7mer
3316-3335
0.002
1
6mer
3378-3404
0.002
0
8mer+mismatch
3316-3335
0.001
1
6mer
2629-2656
0.001
2
7mer
1630-1650
0.001
1
6mer
1612-1624
0.000
2
PCBP1-AS1
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458686
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
857-883
0.021
0
6mer
420-439
0.002
Not Conserved
6mer
407-429
0.001
0
CTC-1337H24.4
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000616071
Biotype: lincRNA
Gene id: ENSG00000275484
Gene Name: CTC-1337H24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-335
0.021
4
7mer
341-356
0.004
3
RP11-459E5.1
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523627
Biotype: antisense
Gene id: ENSG00000253125
Gene Name: RP11-459E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-361
0.025
0
FAM87A
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602608
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-403
0.018
1
7mer
1483-1500
0.007
1
AC005154.6
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
539-563
0.004
4
6mer
14127-14148
0.003
0
6mer
1751-1776
0.002
1
7mer
9432-9455
0.002
1
6mer
7123-7136
0.002
0
6mer
13848-13874
0.001
0
6mer
10912-10938
0.001
1
6mer
3081-3094
0.001
1
6mer
3381-3397
0.001
0
6mer
9589-9608
0.001
1
6mer
12774-12793
0.001
1
6mer
2748-2774
0.001
1
7mer
12735-12758
0.001
0
7mer
12768-12786
0.001
1
6mer
9499-9515
0.001
0
6mer
12601-12618
0.001
0
6mer
10897-10920
0.001
1
6mer
3515-3540
0.001
0
6mer
3547-3566
0.001
0
RP11-805I24.1
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563931
Biotype: lincRNA
Gene id: ENSG00000261177
Gene Name: RP11-805I24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5145-5161
0.012
0
7mer
5560-5585
0.003
1
6mer
1223-1242
0.002
2
6mer
3492-3515
0.001
2
6mer
2083-2104
0.001
1
6mer
5978-5992
0.001
1
6mer
4143-4166
0.001
2
6mer
2950-2975
0.001
0
6mer
3813-3835
0.001
1
6mer
4674-4690
0.001
2
6mer
1215-1227
0.001
0
6mer
3969-3992
0.000
0
6mer
3958-3978
0.000
1
AP001062.7
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000448927
Biotype: antisense
Gene id: ENSG00000184441
Gene Name: AP001062.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2727-2744
0.013
0
7mer
4109-4126
0.004
1
7mer
1337-1353
0.002
1
7mer
2467-2492
0.002
0
6mer
286-308
0.001
1
6mer
3091-3109
0.001
1
6mer
365-386
0.001
1
6mer
3619-3638
0.001
0
LINC00919
hsa-miR-149-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565742
Biotype: lincRNA
Gene id: ENSG00000260268
Gene Name: LINC00919
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-564
0.025
1
AC007326.10
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624224
Biotype: lincRNA
Gene id: ENSG00000280418
Gene Name: AC007326.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4249-4268
0.008
3
7mer
5726-5744
0.003
1
7mer
398-415
0.003
2
7mer
5501-5519
0.002
0
6mer
798-817
0.002
1
6mer
5873-5890
0.001
2
6mer
1187-1202
0.001
0
7mer
2186-2205
0.001
0
6mer
3909-3934
0.001
0
7mer
2800-2819
0.001
1
7mer
3823-3848
0.001
1
6mer
3888-3907
0.000
0
C22orf34
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000444628
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-46
0.011
0
7mer
58-83
0.010
0
6mer
93-108
0.004
0
RP5-858L17.1
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619200
Biotype: antisense
Gene id: ENSG00000276649
Gene Name: RP5-858L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
805-825
0.018
3
6mer
116-137
0.007
3
CTB-31N19.5
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613759
Biotype: lincRNA
Gene id: ENSG00000273956
Gene Name: CTB-31N19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-76
0.017
1
8mer
175-191
0.008
0
RP11-73B2.4
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450077
Biotype: lincRNA
Gene id: ENSG00000232817
Gene Name: RP11-73B2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
456-482
0.014
1
6mer
313-333
0.011
1
RP1-101D8.1
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617854
Biotype: antisense
Gene id: ENSG00000275139
Gene Name: RP1-101D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2646-2661
0.019
1
6mer
1042-1060
0.002
1
7mer
3866-3891
0.002
1
7mer
2059-2081
0.001
1
6mer
1210-1228
0.001
0
RP11-309N24.1
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000442783
Biotype: lincRNA
Gene id: ENSG00000227313
Gene Name: RP11-309N24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-553
0.025
1
ATP2B2-IT2
hsa-miR-149-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419591
Biotype: sense_intronic
Gene id: ENSG00000224771
Gene Name: ATP2B2-IT2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
98-118
0.025
2
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