LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-386B13.3
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509017
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
866-887
0.006
7
6mer
988-1011
0.006
14
6mer
1480-1497
0.003
3
9mer
644-668
0.003
0
6mer
1725-1744
0.002
1
6mer
1132-1152
0.002
1
6mer
1736-1757
0.001
1
7mer
644-664
0.001
0
XXyac-YX155B6.5
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000594699
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-223
0.017
1
6mer
410-433
0.008
1
RP11-422N16.3
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499579
Biotype: antisense
Gene id: ENSG00000248050
Gene Name: RP11-422N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2190-2209
0.009
2
8mer
2200-2215
0.007
2
6mer
2418-2440
0.006
7
6mer
2181-2206
0.002
2
6mer
381-406
0.001
0
RP11-21L23.2
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566747
Biotype: sense_overlapping
Gene id: ENSG00000261578
Gene Name: RP11-21L23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4071-4093
0.006
1
9mer
1794-1812
0.004
Not Conserved
6mer
4059-4082
0.003
2
6mer
3045-3062
0.002
Not Conserved
6mer
3810-3832
0.002
1
6mer
2059-2078
0.002
1
6mer
1762-1787
0.001
Not Conserved
9mer
1783-1796
0.001
0
6mer
3792-3807
0.001
1
9mer
1791-1804
0.001
0
6mer
2077-2091
0.001
1
RP11-560A15.3
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000366097
Biotype: lincRNA
Gene id: ENSG00000203266
Gene Name: RP11-560A15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-383
0.012
1
6mer
731-747
0.008
1
6mer
596-612
0.006
1
RP3-416J7.4
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000580119
Biotype: lincRNA
Gene id: ENSG00000263667
Gene Name: RP3-416J7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1580-1606
0.014
0
7mer
1932-1957
0.005
1
6mer
1294-1317
0.004
1
6mer
1584-1606
0.002
0
STL
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026876.1
Biotype: antisense
Gene id: NR_026876.1 (gene)
Gene Name: STL
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5219-5244
0.020
2
6mer
1336-1356
0.003
0
6mer
3274-3288
0.001
0
6mer
2979-3000
0.001
1
RP11-445N18.7
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427229
Biotype: processed_transcript
Gene id: ENSG00000243349
Gene Name: RP11-445N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1257-1278
0.011
1
7mer
2831-2857
0.008
0
6mer
1017-1042
0.002
0
6mer
1152-1176
0.001
0
6mer
2303-2321
0.001
1
6mer
2331-2353
0.001
0
6mer
1404-1424
0.001
Not Conserved
CTD-2540L5.6
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500016
Biotype: lincRNA
Gene id: ENSG00000245466
Gene Name: CTD-2540L5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2053-2077
0.023
2
6mer
1340-1362
0.001
0
6mer
2026-2050
0.001
0
LINC01001
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
229-249
0.005
Not Conserved
6mer
347-371
0.003
0
6mer
4186-4201
0.002
0
6mer
4377-4394
0.002
Not Conserved
6mer
4059-4075
0.001
Not Conserved
6mer
567-586
0.001
Not Conserved
7mer
653-670
0.001
Not Conserved
6mer
1064-1085
0.001
Not Conserved
6mer
3350-3370
0.001
Not Conserved
7mer
1706-1732
0.001
Not Conserved
6mer
792-809
0.001
Not Conserved
6mer
2996-3015
0.001
Not Conserved
6mer
2804-2826
0.001
0
6mer
729-745
0.001
Not Conserved
7mer
1609-1635
0.001
0
7mer
3252-3278
0.000
Not Conserved
6mer
2130-2150
0.000
Not Conserved
6mer
2358-2377
0.000
Not Conserved
7mer
1512-1537
0.000
Not Conserved
6mer
2883-2900
0.000
Not Conserved
7mer
1560-1586
0.000
Not Conserved
7mer
1852-1878
0.000
Not Conserved
7mer
1755-1781
0.000
Not Conserved
7mer
1658-1683
0.000
Not Conserved
6mer
2301-2323
0.000
Not Conserved
7mer
1804-1829
0.000
Not Conserved
7mer
1901-1919
0.000
Not Conserved
6mer
1949-1974
0.000
Not Conserved
7mer
1463-1481
0.000
Not Conserved
6mer
2061-2081
0.000
Not Conserved
6mer
2959-2980
0.000
Not Conserved
7mer
2031-2057
0.000
Not Conserved
LINC00919
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561513
Biotype: lincRNA
Gene id: ENSG00000260268
Gene Name: LINC00919
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-564
0.025
1
RP1-179N16.6
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000499560
Biotype: antisense
Gene id: ENSG00000246982
Gene Name: RP1-179N16.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1010-1028
0.015
7
6mer
268-292
0.005
0
6mer
894-914
0.005
1
AC007163.3
hsa-miR-149-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452787
Biotype: lincRNA
Gene id: ENSG00000237166
Gene Name: AC007163.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1352-1362
0.014
3
6mer
1811-1837
0.005
3
7mer
1834-1850
0.004
1
6mer
1734-1754
0.002
0
XLOC_000294
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8043-8068
0.005
3
7mer
6100-6119
0.004
1
7mer
3995-4016
0.003
1
6mer
422-447
0.003
1
6mer
260-278
0.002
1
6mer
3857-3873
0.002
0
6mer
709-727
0.002
0
7mer
8043-8065
0.001
2
6mer
7461-7480
0.001
1
6mer
6698-6714
0.001
1
6mer
6546-6561
0.001
1
6mer
6568-6593
0.000
1
CTD-3074O7.5
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525142
Biotype: antisense
Gene id: ENSG00000255517
Gene Name: CTD-3074O7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-158
0.017
3
7mer
436-451
0.005
1
7mer
72-92
0.002
2
RP11-77P16.4
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000507856
Biotype: lincRNA
Gene id: ENSG00000249846
Gene Name: RP11-77P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-286
0.025
4
AC083949.1
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458490
Biotype: antisense
Gene id: ENSG00000224875
Gene Name: AC083949.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-380
0.025
0
RP11-572C15.5
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481624
Biotype: lincRNA
Gene id: ENSG00000240893
Gene Name: RP11-572C15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1867-1886
0.014
0
6mer
1798-1819
0.004
1
6mer
55-64
0.004
1
6mer
139-153
0.003
1
ZNF213-AS1
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573447
Biotype: antisense
Gene id: ENSG00000263072
Gene Name: ZNF213-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1016-1040
0.018
1
6mer
90-115
0.007
0
LINC01205
hsa-miR-149-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497996
Biotype: lincRNA
Gene id: ENSG00000228980
Gene Name: LINC01205
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-123
0.025
1
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