LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
MIR3179-1
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000546674
Biotype: lincRNA
Gene id: ENSG00000257264
Gene Name: MIR3179-1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-286
0.025
4
XLOC_001924
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005049
Biotype: transcript isomorph
Gene id: XLOC_001924
Gene Name: XLOC_001924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
471-491
0.025
1
MIR124-2HG
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521441
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-70
0.017
8
8mer
425-441
0.008
6
XLOC_013952
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029032
Biotype: transcript isomorph
Gene id: XLOC_013952
Gene Name: XLOC_013952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
644-669
0.010
1
7mer
207-228
0.009
0
6mer
509-529
0.006
1
RP11-470L19.2
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457402
Biotype: lincRNA
Gene id: ENSG00000235407
Gene Name: RP11-470L19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1719
0.006
1
7mer
1686-1704
0.006
0
6mer
1975-1992
0.004
2
7mer
265-282
0.003
1
6mer
537-556
0.003
1
8mer
1709-1734
0.003
1
6mer
522-548
0.001
1
RP11-126K1.6
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455503
Biotype: antisense
Gene id: ENSG00000237976
Gene Name: RP11-126K1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-181
0.016
4
6mer
136-161
0.009
5
RP11-458F8.4
hsa-miR-149-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2834-2850
0.006
1
6mer
3112-3133
0.005
1
6mer
22-45
0.005
0
6mer
2891-2910
0.002
0
6mer
1505-1527
0.002
0
7mer
899-922
0.002
0
6mer
963-978
0.001
0
6mer
2026-2050
0.001
1
6mer
1182-1202
0.001
0
6mer
1551-1567
0.001
1
6mer
1752-1767
0.000
Not Conserved
RP11-142C4.6
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525714
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-524
0.013
Not Conserved
8mer
516-532
0.012
0
XLOC_010902
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022396
Biotype: transcript isomorph
Gene id: XLOC_010902
Gene Name: XLOC_010902
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-57
0.012
Not Conserved
7mer
871-886
0.004
1
6mer
108-134
0.003
0
6mer
391-407
0.002
Not Conserved
6mer
964-987
0.002
4
6mer
1500-1518
0.001
1
6mer
1507-1525
0.000
2
RP11-33A14.1
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000411727
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1110-1136
0.008
1
7mer
2050-2074
0.007
Not Conserved
7mer
688-710
0.006
1
7mer
819-836
0.002
1
6mer
578-601
0.002
0
MIAT
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9459-9481
0.009
1
6mer
9541-9558
0.003
1
6mer
600-626
0.002
1
6mer
837-851
0.002
1
7mer
2646-2662
0.002
1
6mer
6804-6820
0.001
3
6mer
6699-6718
0.001
3
6mer
1776-1799
0.001
4
6mer
1738-1757
0.001
2
6mer
2585-2612
0.001
1
6mer
1886-1901
0.000
1
LINC01140
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000467438
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2007-2026
0.006
1
7mer
52-76
0.006
1
6mer
2217-2244
0.006
2
6mer
286-302
0.006
0
6mer
2007-2023
0.001
1
XLOC_006322
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012854
Biotype: transcript isomorph
Gene id: XLOC_006322
Gene Name: XLOC_006322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1540-1565
0.008
1
8mer
1622-1632
0.003
Not Conserved
8mer+wobble
542-564
0.003
1
6mer
4437-4454
0.002
0
6mer
5480-5503
0.002
1
6mer
39-64
0.001
Not Conserved
6mer
115-140
0.001
Not Conserved
6mer
153-178
0.001
Not Conserved
6mer
191-216
0.001
Not Conserved
6mer
82-102
0.001
Not Conserved
7mer
2328-2349
0.001
0
AC005606.14
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565041
Biotype: lincRNA
Gene id: ENSG00000261790
Gene Name: AC005606.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-30
0.025
0
RP11-1070N10.3
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554161
Biotype: lincRNA
Gene id: ENSG00000258572
Gene Name: RP11-1070N10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-426
0.020
1
6mer
428-447
0.004
2
6mer
609-629
0.002
1
RP11-297C4.3
hsa-miR-149-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562525
Biotype: antisense
Gene id: ENSG00000260487
Gene Name: RP11-297C4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
171-187
0.005
1
6mer
9-23
0.005
1
6mer
422-436
0.004
1
7mer
316-343
0.003
1
6mer
454-472
0.003
1
6mer
184-206
0.003
1
6mer
336-350
0.002
1
RP11-203J24.8
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608805
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
748-774
0.025
2
TTN-AS1
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592161
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-224
0.025
1
CTB-78F1.1
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522956
Biotype: antisense
Gene id: ENSG00000254187
Gene Name: CTB-78F1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
788-807
0.020
1
6mer
865-880
0.003
1
6mer
1034-1048
0.002
1
RP11-960L18.1
hsa-miR-149-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569731
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-658
0.014
0
7mer
136-158
0.011
0
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