LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
AC093390.1
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426976
Biotype: antisense
Gene id: ENSG00000232057
Gene Name: AC093390.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3164-3183
0.005
1
9mer
1977-1999
0.005
1
7mer
2485-2506
0.004
1
7mer
1746-1766
0.003
1
6mer
3260-3274
0.003
2
8mer
2021-2037
0.002
1
6mer
659-679
0.002
0
6mer
1977-1995
0.001
0
LOC100129917
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
874-898
0.009
0
6mer
1090-1108
0.008
1
6mer
463-479
0.008
1
RP11-139J15.5
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427232
Biotype: lincRNA
Gene id: ENSG00000234244
Gene Name: RP11-139J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-251
0.023
0
6mer
218-241
0.003
0
RP11-108M9.3
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619677
Biotype: pseudogene
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-85
0.014
1
6mer
740-758
0.006
1
6mer
786-810
0.006
0
FAM226B
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602508
Biotype: sense_intronic
Gene id: ENSG00000269911
Gene Name: FAM226B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-70
0.011
1
7mer
1343-1363
0.007
0
6mer
80-99
0.007
3
LAMTOR5-AS1
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609512
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-523
0.013
1
6mer
96-119
0.006
1
6mer
397-419
0.004
1
6mer
83-106
0.003
0
CTD-2008P7.1
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
114-135
0.014
1
6mer
350-367
0.011
1
AC012507.3
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415628
Biotype: antisense
Gene id: ENSG00000232520
Gene Name: AC012507.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-536
0.015
0
7mer
1292-1316
0.005
2
6mer
295-308
0.003
2
6mer
1275-1302
0.002
2
CTC-499B15.7
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589227
Biotype: antisense
Gene id: ENSG00000267646
Gene Name: CTC-499B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1573-1593
0.015
0
6mer
1743-1769
0.004
1
6mer
1583-1609
0.004
1
6mer
90-101
0.003
Not Conserved
CTD-3162L10.1
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1899-1921
0.008
1
6mer
2052-2068
0.008
1
6mer
283-307
0.007
1
6mer
1875-1889
0.003
0
RP4-555D20.4
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606217
Biotype: lincRNA
Gene id: ENSG00000272121
Gene Name: RP4-555D20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
819-845
0.021
6
6mer
207-229
0.003
3
6mer
543-557
0.002
2
CTD-3162L10.1
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1899-1921
0.008
1
6mer
2052-2068
0.008
1
6mer
283-307
0.007
1
6mer
1875-1889
0.003
0
RP1-92O14.6
hsa-miR-149-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436713
Biotype: antisense
Gene id: ENSG00000229431
Gene Name: RP1-92O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-484
0.021
0
6mer
282-298
0.004
5
RP11-15H20.6
hsa-miR-149-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598599
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
295-311
0.014
1
6mer
327-342
0.011
1
SHANK3
hsa-miR-149-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5878-5897
0.006
1
7mer
6276-6294
0.004
6
7mer
3317-3335
0.003
5
6mer
4406-4426
0.002
7
7mer
389-407
0.002
4
6mer
2462-2475
0.001
5
6mer
1393-1416
0.001
5
6mer
4610-4636
0.001
7
7mer
3118-3143
0.001
3
7mer
3375-3401
0.001
5
7mer
88-106
0.001
1
6mer
3533-3548
0.001
3
7mer
3537-3560
0.000
3
6mer
2635-2653
0.000
0
MIAT
hsa-miR-149-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9585-9607
0.010
1
6mer
9667-9684
0.003
1
6mer
726-752
0.002
1
7mer
2772-2788
0.002
1
6mer
963-977
0.002
1
6mer
6930-6946
0.001
3
6mer
6825-6844
0.001
3
6mer
1902-1925
0.001
4
6mer
1864-1883
0.001
2
6mer
2711-2738
0.001
1
6mer
2012-2027
0.000
1
FAM212B-AS1
hsa-miR-149-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430373
Biotype: antisense
Gene id: ENSG00000227811
Gene Name: FAM212B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2015-2038
0.023
2
6mer
527-541
0.002
2
SLX1B-SULT1A4
hsa-miR-149-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037609.1
Biotype: sense
Gene id: NR_037609.1 (gene)
Gene Name: SLX1B-SULT1A4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2140-2167
0.017
1
6mer
1545-1564
0.003
4
6mer
477-498
0.002
4
6mer
663-681
0.001
1
6mer
921-945
0.001
1
6mer
1243-1265
0.001
0
6mer
523-549
0.001
0
CTD-2542L18.1
hsa-miR-149-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567093
Biotype: lincRNA
Gene id: ENSG00000260417
Gene Name: CTD-2542L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3389-3408
0.013
Not Conserved
6mer
127-143
0.003
0
7mer
1228-1253
0.002
1
7mer
1005-1030
0.001
0
6mer
650-669
0.001
Not Conserved
7mer
1997-2023
0.001
2
6mer
1086-1100
0.001
0
8mer
1319-1341
0.001
Not Conserved
6mer
1314-1332
0.001
1
6mer
2106-2133
0.001
0
6mer
1228-1248
0.000
0
7mer
1293-1310
0.000
0
8mer
1314-1338
0.000
Not Conserved
MIR124-2HG
hsa-miR-149-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520799
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-70
0.018
8
8mer
425-441
0.008
6
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