LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011176
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023866
Biotype: transcript isomorph
Gene id: XLOC_011176
Gene Name: XLOC_011176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
982-1006
0.022
Not Conserved
6mer
55-71
0.003
Not Conserved
6mer
691-716
0.001
Not Conserved
LINC01189
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3027-3047
0.019
1
6mer
1088-1109
0.004
1
6mer
1062-1084
0.003
0
C22orf34
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414287
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-378
0.017
1
6mer
2129-2142
0.003
1
6mer
1264-1290
0.002
0
6mer
1868-1890
0.002
Not Conserved
6mer
1015-1030
0.001
1
8mer+mismatch
1013-1030
0.001
1
RP11-264B17.3
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1346
0.015
1
8mer+wobble
1776-1802
0.004
1
6mer
278-289
0.003
2
7mer
3089-3107
0.001
3
7mer
2946-2971
0.001
2
6mer
1394-1418
0.001
7
6mer
3695-3713
0.001
2
6mer
3401-3417
0.000
0
6mer
2961-2985
0.000
1
6mer
3442-3459
0.000
0
RP11-65J3.14
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565882
Biotype: lincRNA
Gene id: ENSG00000261334
Gene Name: RP11-65J3.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
228-245
0.015
2
6mer
1589-1605
0.005
4
8mer
801-817
0.003
1
6mer
45-72
0.002
2
6mer
938-951
0.001
0
AC003102.3
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586388
Biotype: antisense
Gene id: ENSG00000267750
Gene Name: AC003102.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1952-1967
0.013
0
6mer
244-260
0.005
0
6mer
2024-2048
0.004
1
6mer
109-134
0.004
0
H19
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000446406
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-44
0.021
4
7mer
385-404
0.005
1
OTX2-AS1
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000534909
Biotype: lincRNA
Gene id: ENSG00000248550
Gene Name: OTX2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1392-1417
0.010
1
6mer
1949-1968
0.005
1
6mer
2105-2121
0.003
1
6mer
1959-1981
0.003
0
6mer
316-334
0.002
1
6mer
948-966
0.002
0
6mer
1115-1137
0.001
1
LINC01237
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430555
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
772-793
0.012
0
6mer
500-521
0.012
1
6mer
240-258
0.002
Not Conserved
RP11-350F16.1
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524012
Biotype: lincRNA
Gene id: ENSG00000253745
Gene Name: RP11-350F16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-256
0.021
1
6mer
577-592
0.004
1
XLOC_004951
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010435
Biotype: transcript isomorph
Gene id: XLOC_004951
Gene Name: XLOC_004951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-76
0.016
5
6mer
113-132
0.008
5
6mer
556-577
0.002
1
RP11-260G13.1
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549515
Biotype: lincRNA
Gene id: ENSG00000258107
Gene Name: RP11-260G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
33-49
0.018
12
6mer
579-603
0.005
2
6mer
289-305
0.003
1
H19
hsa-miR-149-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000442037
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-84
0.021
4
7mer
425-444
0.005
1
RP11-93H12.4
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000474115
Biotype: antisense
Gene id: ENSG00000270002
Gene Name: RP11-93H12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1373-1395
0.012
1
7mer
2536-2560
0.009
0
7mer
1146-1167
0.003
1
6mer
1517-1540
0.001
1
7mer
1154-1175
0.001
Not Conserved
KCNMA1-AS2
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428936
Biotype: antisense
Gene id: ENSG00000225497
Gene Name: KCNMA1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-43
0.026
3
TTN-AS1
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442329
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-273
0.021
1
7mer
15-34
0.004
1
RP11-360A18.2
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561476
Biotype: lincRNA
Gene id: ENSG00000261432
Gene Name: RP11-360A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1098-1115
0.011
2
7mer
2111-2130
0.010
4
6mer
1849-1869
0.003
2
6mer
1249-1260
0.001
2
RP11-218C14.8
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000602977
Biotype: lincRNA
Gene id: ENSG00000270001
Gene Name: RP11-218C14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-247
0.016
1
7mer
342-363
0.006
0
6mer
254-274
0.003
0
RP5-875O13.1
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614408
Biotype: pseudogene
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
744-767
0.014
1
6mer
71-89
0.006
1
6mer
19-43
0.006
0
TTN-AS1
hsa-miR-149-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431259
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-273
0.021
1
7mer
15-34
0.004
1
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