LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
CTD-2140B24.6
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000606110
Biotype: antisense
Gene id: ENSG00000271963
Gene Name: CTD-2140B24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-167
0.023
3
6mer
56-77
0.003
2
XLOC_001966
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004118
Biotype: transcript isomorph
Gene id: XLOC_001966
Gene Name: XLOC_001966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1240-1252
0.011
0
8mer
1720-1741
0.006
1
6mer
1653-1676
0.004
0
6mer
207-223
0.002
1
6mer
629-645
0.002
0
RP11-314B1.2
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2192-2219
0.026
1
LINC00174
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416572
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
270-292
0.013
1
6mer
283-303
0.013
1
XLOC_011456
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023655
Biotype: transcript isomorph
Gene id: XLOC_011456
Gene Name: XLOC_011456
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-497
0.022
0
6mer
85-100
0.004
0
AC093627.10
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000484550
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4218-4232
0.010
1
6mer
1822-1843
0.003
1
7mer
545-569
0.002
1
6mer
2524-2543
0.002
1
6mer
4241-4257
0.002
1
6mer
3816-3830
0.002
1
6mer
778-797
0.001
1
6mer
2679-2693
0.001
1
7mer
226-242
0.001
Not Conserved
6mer
1959-1976
0.001
1
6mer
2536-2562
0.000
1
AC007952.5
hsa-miR-149-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574724
Biotype: retained_intron
Gene id: ENSG00000228157
Gene Name: AC007952.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-448
0.007
1
7mer
570-592
0.007
1
7mer
1191-1213
0.005
1
6mer
94-113
0.004
1
6mer
260-283
0.003
0
CTD-3234P18.6
hsa-miR-149-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000611182
Biotype: lincRNA
Gene id: ENSG00000276071
Gene Name: CTD-3234P18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-799
0.021
1
6mer
73-92
0.005
1
RP11-13N12.1
hsa-miR-149-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521411
Biotype: lincRNA
Gene id: ENSG00000253496
Gene Name: RP11-13N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-518
0.026
1
RP11-302L19.1
hsa-miR-149-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429305
Biotype: antisense
Gene id: ENSG00000232197
Gene Name: RP11-302L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-304
0.016
0
7mer
328-351
0.010
0
RP11-349H17.2
hsa-miR-149-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000615734
Biotype: sense_intronic
Gene id: ENSG00000275805
Gene Name: RP11-349H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1282-1304
0.014
1
8mer
1552-1569
0.005
1
6mer
579-595
0.004
5
6mer
905-929
0.003
3
AC093642.4
hsa-miR-149-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412193
Biotype: lincRNA
Gene id: ENSG00000226423
Gene Name: AC093642.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
247-263
0.013
1
6mer
87-99
0.005
0
6mer
11-28
0.004
Not Conserved
7mer
36-51
0.003
Not Conserved
MIAT
hsa-miR-149-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9585-9607
0.010
1
6mer
9667-9684
0.003
1
6mer
600-626
0.002
1
6mer
837-851
0.002
1
7mer
2772-2788
0.002
1
6mer
6930-6946
0.001
3
6mer
6825-6844
0.001
3
6mer
1864-1883
0.001
2
6mer
1902-1925
0.001
4
6mer
2711-2738
0.001
1
6mer
2012-2027
0.000
1
RP11-94L15.2
hsa-miR-149-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-262
0.010
3
6mer
956-972
0.003
6
6mer
3333-3354
0.002
1
6mer
3762-3781
0.002
1
6mer
3196-3218
0.001
1
6mer
1609-1635
0.001
1
6mer
4409-4430
0.001
0
6mer
1461-1483
0.001
1
6mer
5067-5089
0.001
0
6mer
4932-4949
0.001
1
6mer
2951-2967
0.001
1
6mer
5099-5117
0.001
1
6mer
1596-1618
0.001
1
ERVK3-1
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000427361
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
812-830
0.026
1
RP4-773N10.4
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000554749
Biotype: antisense
Gene id: ENSG00000258634
Gene Name: RP4-773N10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-132
0.012
5
6mer
3767-3791
0.003
2
7mer
637-650
0.003
0
6mer
3571-3589
0.002
1
6mer
3675-3689
0.002
1
6mer
1952-1977
0.002
0
6mer
1302-1327
0.001
1
6mer
2015-2030
0.001
3
6mer
1312-1334
0.000
2
6mer
2117-2133
0.000
1
XLOC_007378
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015685
Biotype: transcript isomorph
Gene id: XLOC_007378
Gene Name: XLOC_007378
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-145
0.021
Not Conserved
6mer
343-361
0.004
Not Conserved
RP11-540O11.1
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000503052
Biotype: lincRNA
Gene id: ENSG00000251161
Gene Name: RP11-540O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1473-1490
0.016
2
6mer
115-137
0.003
1
6mer
1386-1410
0.003
1
6mer
1409-1435
0.002
1
6mer
1128-1149
0.002
1
H19
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000411861
Biotype: retained_intron
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-84
0.021
4
7mer
425-444
0.005
1
RP11-344B5.4
hsa-miR-149-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427080
Biotype: lincRNA
Gene id: ENSG00000235007
Gene Name: RP11-344B5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
690-714
0.012
1
7mer
730-748
0.007
1
6mer
766-788
0.004
1
6mer
285-303
0.002
1
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