LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-61I13.3
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-250
0.011
0
7mer
377-399
0.009
2
6mer
2668-2689
0.004
3
6mer
2348-2372
0.001
4
6mer
2272-2290
0.001
1
MIR490
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000592183
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
91-110
0.018
1
7mer
471-494
0.006
0
6mer
185-203
0.003
0
RP11-600F24.7
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000568177
Biotype: antisense
Gene id: ENSG00000260285
Gene Name: RP11-600F24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1856-1875
0.013
1
7mer
3068-3090
0.004
0
7mer
389-410
0.002
0
6mer
2799-2815
0.001
2
6mer
1292-1315
0.001
1
7mer
2721-2742
0.001
1
6mer
3468-3484
0.001
1
8mer+wobble
1791-1806
0.001
0
LOXL1-AS1
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567257
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2063-2081
0.003
4
6mer
540-556
0.002
1
6mer
1714-1737
0.002
0
6mer
1878-1900
0.002
1
LOXL1-AS1
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567644
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
419-437
0.005
4
6mer
234-256
0.003
1
XLOC_012041
hsa-miR-149-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024306
Biotype: transcript isomorph
Gene id: XLOC_012041
Gene Name: XLOC_012041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4533-4549
0.011
0
7mer
4948-4973
0.003
1
6mer
611-630
0.003
2
6mer
603-615
0.002
0
6mer
2880-2903
0.002
2
6mer
1471-1492
0.001
1
6mer
5366-5380
0.001
1
6mer
2338-2363
0.001
0
6mer
3531-3554
0.001
2
6mer
4062-4078
0.001
2
6mer
3201-3223
0.001
1
6mer
3357-3380
0.000
0
6mer
3346-3366
0.000
1
RP11-254F7.1
hsa-miR-149-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000566840
Biotype: lincRNA
Gene id: ENSG00000260476
Gene Name: RP11-254F7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1221-1241
0.016
0
8mer
857-877
0.006
1
6mer
238-260
0.004
2
LINC00087
hsa-miR-149-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433425
Biotype: lincRNA
Gene id: ENSG00000196972
Gene Name: LINC00087
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-536
0.006
1
7mer
218-239
0.006
1
8mer+mismatch
276-296
0.005
1
7mer
1700-1719
0.004
1
6mer
223-247
0.003
1
6mer
1460-1474
0.001
2
6mer
1403-1414
0.001
1
AC079779.5
hsa-miR-149-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586715
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
212-229
0.018
1
7mer
590-607
0.004
1
8mer+mismatch
585-605
0.002
1
6mer
110-137
0.002
Not Conserved
RP11-425I13.3
hsa-miR-149-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_033939.1
Biotype: antisense
Gene id: NR_033939.1 (gene)
Gene Name: RP11-425I13.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1710-1730
0.014
0
7mer
1080-1100
0.010
1
6mer
994-1016
0.001
2
RP11-203J24.8
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000587355
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-767
0.020
2
7mer
313-337
0.004
2
6mer
133-151
0.003
1
RP11-414J4.2
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000488000
Biotype: retained_intron
Gene id: ENSG00000261606
Gene Name: RP11-414J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2540-2555
0.011
3
7mer
3876-3898
0.006
0
9mer
2648-2669
0.004
3
6mer
4067-4091
0.002
1
6mer
3905-3925
0.002
2
6mer
2648-2665
0.000
3
RP11-545A16.4
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567150
Biotype: sense_overlapping
Gene id: ENSG00000261060
Gene Name: RP11-545A16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
815-831
0.026
Not Conserved
RP11-203J24.8
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590283
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
655-681
0.020
2
7mer
227-251
0.004
2
6mer
136-154
0.003
1
XLOC_005596
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011443
Biotype: transcript isomorph
Gene id: XLOC_005596
Gene Name: XLOC_005596
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-306
0.017
1
7mer
282-301
0.009
2
RP3-470L22.1
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000435429
Biotype: lincRNA
Gene id: ENSG00000224532
Gene Name: RP3-470L22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-424
0.017
1
7mer
400-419
0.009
2
RP11-804H8.6
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-564
0.024
1
6mer
925-940
0.002
1
FAM182A
hsa-miR-149-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000471057
Biotype: lincRNA
Gene id: ENSG00000125804
Gene Name: FAM182A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-66
0.022
0
6mer
113-135
0.004
0
RP11-718G2.5
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553791
Biotype: lincRNA
Gene id: ENSG00000259033
Gene Name: RP11-718G2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
418-434
0.017
0
7mer
265-280
0.006
1
6mer
288-304
0.003
0
RP11-63G10.3
hsa-miR-149-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607372
Biotype: lincRNA
Gene id: ENSG00000272226
Gene Name: RP11-63G10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-385
0.026
4
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