LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LOC646762
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024278.1
Biotype: lincRNA
Gene id: NR_024278.1 (gene)
Gene Name: LOC646762
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-397
0.020
0
6mer
4586-4602
0.002
Not Conserved
6mer
5133-5156
0.001
0
6mer
2956-2977
0.001
1
6mer
2788-2804
0.001
0
6mer
4332-4351
0.001
Not Conserved
6mer
3718-3742
0.001
0
SLX1B-SULT1A4
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564950
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2168-2195
0.018
1
6mer
1573-1592
0.003
4
6mer
505-526
0.002
4
6mer
949-973
0.001
1
6mer
691-709
0.001
1
6mer
1271-1293
0.001
0
6mer
551-577
0.001
0
XLOC_011054
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022770
Biotype: transcript isomorph
Gene id: XLOC_011054
Gene Name: XLOC_011054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1657-1675
0.016
1
7mer
1023-1039
0.005
0
6mer
174-199
0.003
0
6mer
142-164
0.002
Not Conserved
XLOC_014114
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029175
Biotype: transcript isomorph
Gene id: XLOC_014114
Gene Name: XLOC_014114
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1524-1542
0.016
0
7mer
413-439
0.009
0
6mer
72-90
0.001
Not Conserved
LOXL1-AS1
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565416
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
149-172
0.003
0
6mer
313-335
0.002
1
XLOC_009483
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3737-3761
0.006
2
9mer
2290-2303
0.004
0
7mer
3061-3081
0.004
0
6mer
179-203
0.003
0
6mer
3400-3423
0.003
2
7mer
3048-3072
0.002
0
6mer
3469-3490
0.002
0
6mer
2878-2904
0.002
0
7mer
3034-3056
0.001
0
DBH-AS1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102735.1
Biotype: antisense
Gene id: NR_102735.1 (gene)
Gene Name: DBH-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
796-810
0.011
1
7mer
366-389
0.008
1
7mer
620-645
0.006
2
6mer
976-993
0.001
1
SHANK3
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5663-5682
0.007
1
7mer
6061-6079
0.005
6
7mer
3129-3147
0.003
5
7mer
162-180
0.003
4
6mer
4218-4238
0.002
7
6mer
1166-1189
0.002
5
6mer
2274-2287
0.001
5
6mer
4422-4448
0.001
7
7mer
2930-2955
0.001
3
7mer
3187-3213
0.001
5
6mer
3345-3360
0.001
3
7mer
3349-3372
0.000
3
6mer
2447-2465
0.000
0
RP11-355N15.1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561083
Biotype: antisense
Gene id: ENSG00000259293
Gene Name: RP11-355N15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-621
0.015
0
7mer
460-480
0.008
1
6mer
780-796
0.002
1
6mer
948-962
0.002
1
AC073316.1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437354
Biotype: antisense
Gene id: ENSG00000236708
Gene Name: AC073316.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
612-628
0.017
0
6mer
621-644
0.005
2
6mer
273-287
0.004
1
RP11-40A13.1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584688
Biotype: antisense
Gene id: ENSG00000266535
Gene Name: RP11-40A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
49-69
0.016
6
8mer+mismatch
114-136
0.010
8
HAND2-AS1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509866
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-386
0.024
1
6mer
372-383
0.002
1
FAM138A
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417324
Biotype: lincRNA
Gene id: ENSG00000237613
Gene Name: FAM138A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1102
0.017
0
6mer
230-248
0.003
0
6mer
753-775
0.003
0
6mer
766-783
0.003
0
LOXL1-AS1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568229
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
399-411
0.003
1
6mer
562-584
0.003
1
RP11-580I1.1
hsa-miR-149-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568541
Biotype: lincRNA
Gene id: ENSG00000260780
Gene Name: RP11-580I1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-230
0.017
0
7mer
202-227
0.009
1
ZEB1-AS1
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606250
Biotype: antisense
Gene id: ENSG00000237036
Gene Name: ZEB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
108-132
0.012
1
8mer+wobble
113-132
0.010
1
6mer
364-390
0.003
0
6mer
116-132
0.002
1
RNF217-AS1
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000439075
Biotype: antisense
Gene id: ENSG00000236548
Gene Name: RNF217-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4369-4394
0.019
2
6mer
486-506
0.005
0
6mer
2424-2438
0.001
0
6mer
2129-2150
0.001
1
FAM157C
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570230
Biotype: lincRNA
Gene id: ENSG00000260528
Gene Name: FAM157C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
83-105
0.007
1
6mer
453-472
0.003
0
6mer
463-485
0.003
0
6mer
1429-1448
0.003
1
6mer
1439-1461
0.003
1
6mer
622-641
0.002
0
6mer
367-394
0.002
Not Conserved
6mer
1343-1369
0.001
0
6mer
1124-1141
0.001
Not Conserved
6mer
1315-1330
0.001
Not Conserved
XLOC_014119
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029180
Biotype: transcript isomorph
Gene id: XLOC_014119
Gene Name: XLOC_014119
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
348-370
0.009
1
6mer
361-387
0.007
1
6mer
219-237
0.006
1
6mer
106-123
0.004
1
AC098823.3
hsa-miR-149-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415174
Biotype: lincRNA
Gene id: ENSG00000226125
Gene Name: AC098823.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1902-1923
0.005
1
7mer
1968-1989
0.004
0
6mer
2422-2444
0.004
1
7mer
1589-1612
0.003
1
6mer
2227-2254
0.003
1
6mer
442-464
0.003
1
6mer
2454-2472
0.002
1
6mer
1640-1657
0.002
1
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