LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP1-178F10.3
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577764
Biotype: lincRNA
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1426-1446
0.010
1
8mer
771-797
0.008
0
6mer
130-149
0.003
3
6mer
750-776
0.003
1
6mer
1214-1233
0.002
2
CYP4F26P
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602933
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-496
0.015
0
8mer
475-493
0.011
0
ESRG
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000583516
Biotype: sense_intronic
Gene id: ENSG00000265992
Gene Name: ESRG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-545
0.007
1
7mer
2851-2871
0.006
Not Conserved
8mer
1912-1928
0.005
Not Conserved
7mer
3001-3020
0.004
Not Conserved
6mer
2205-2228
0.002
Not Conserved
6mer
1739-1759
0.001
Not Conserved
6mer
1238-1258
0.001
Not Conserved
7mer
1689-1715
0.001
Not Conserved
ZNF503-AS2
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000466942
Biotype: antisense
Gene id: ENSG00000237149
Gene Name: ZNF503-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-451
0.017
10
7mer
488-511
0.004
6
6mer
395-421
0.004
6
6mer
1070-1091
0.002
0
ESRG
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027122.1
Biotype: antisense
Gene id: NR_027122.1 (gene)
Gene Name: ESRG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-543
0.007
1
7mer
2849-2869
0.006
Not Conserved
8mer
1910-1926
0.005
Not Conserved
7mer
2999-3018
0.004
Not Conserved
6mer
2203-2226
0.002
Not Conserved
6mer
1737-1757
0.001
Not Conserved
6mer
1236-1256
0.001
Not Conserved
7mer
1687-1713
0.001
Not Conserved
XLOC_011043
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022372
Biotype: transcript isomorph
Gene id: XLOC_011043
Gene Name: XLOC_011043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2422-2441
0.027
0
CYP4F26P
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000433357
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-758
0.015
0
8mer
737-755
0.012
0
XLOC_009777
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020445
Biotype: transcript isomorph
Gene id: XLOC_009777
Gene Name: XLOC_009777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-717
0.019
0
6mer
42-61
0.003
0
7mer
326-352
0.003
3
6mer
323-338
0.001
1
XLOC_006122
hsa-miR-149-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-275
0.016
0
6mer
422-443
0.010
1
OSTM1-AS1
hsa-miR-149-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426008
Biotype: lincRNA
Gene id: ENSG00000225174
Gene Name: OSTM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
621-635
0.023
0
6mer
339-358
0.003
1
XLOC_003943
hsa-miR-149-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007758
Biotype: transcript isomorph
Gene id: XLOC_003943
Gene Name: XLOC_003943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-202
0.024
0
7mer
171-183
0.003
Not Conserved
RP11-1293J14.1
hsa-miR-149-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607415
Biotype: lincRNA
Gene id: ENSG00000271868
Gene Name: RP11-1293J14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-34
0.026
1
XLOC_001047
hsa-miR-149-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000646
Biotype: transcript isomorph
Gene id: XLOC_001047
Gene Name: XLOC_001047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2781-2807
0.006
3
8mer
3842-3863
0.006
0
8mer+wobble
3454-3477
0.003
1
6mer
2205-2230
0.003
5
6mer
925-942
0.002
1
7mer
3845-3871
0.002
1
6mer
1066-1091
0.002
0
7mer
2200-2214
0.001
4
6mer
3116-3137
0.001
0
6mer
2051-2067
0.001
1
RP11-102M11.2
hsa-miR-149-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000564748
Biotype: antisense
Gene id: ENSG00000261758
Gene Name: RP11-102M11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2625-2642
0.009
1
7mer
2682-2705
0.009
1
7mer
150-175
0.005
1
6mer
1738-1753
0.002
3
6mer
559-584
0.002
0
LINC01279
hsa-miR-149-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
739-753
0.010
1
6mer
4944-4967
0.006
2
7mer
4936-4953
0.005
1
6mer
4797-4821
0.003
1
6mer
1789-1802
0.002
1
6mer
2731-2746
0.001
2
RP11-66D17.3
hsa-miR-149-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441272
Biotype: lincRNA
Gene id: ENSG00000237588
Gene Name: RP11-66D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2783-2809
0.006
3
8mer
3844-3865
0.006
0
8mer+wobble
3456-3479
0.003
1
6mer
2207-2232
0.003
5
6mer
927-944
0.002
1
7mer
3847-3873
0.002
1
6mer
1068-1093
0.002
0
7mer
2202-2216
0.001
4
6mer
3118-3139
0.001
0
6mer
2053-2069
0.001
1
AC108488.4
hsa-miR-149-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438482
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
359-377
0.015
Not Conserved
6mer
11-33
0.007
0
6mer
370-391
0.004
0
CADM3-AS1
hsa-miR-149-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415675
Biotype: antisense
Gene id: ENSG00000225670
Gene Name: CADM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2601-2622
0.012
2
7mer
2624-2640
0.004
1
6mer
345-359
0.004
1
7mer
2981-2994
0.003
0
6mer
3107-3124
0.001
1
7mer
2619-2640
0.001
4
6mer
2141-2160
0.001
1
7mer
2604-2622
0.001
2
XLOC_000555
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001266
Biotype: transcript isomorph
Gene id: XLOC_000555
Gene Name: XLOC_000555
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3005-3028
0.016
0
7mer
2391-2409
0.005
2
8mer
586-610
0.003
1
6mer
3005-3025
0.002
0
6mer
1553-1575
0.001
1
XLOC_007354
hsa-miR-149-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015980
Biotype: transcript isomorph
Gene id: XLOC_007354
Gene Name: XLOC_007354
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
180-196
0.010
2
8mer
624-639
0.007
0
6mer
719-737
0.004
1
6mer
22-41
0.002
Not Conserved
6mer
611-636
0.002
0
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