LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-442O1.3
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621095
Biotype: lincRNA
Gene id: ENSG00000275088
Gene Name: RP11-442O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1489-1505
0.008
1
7mer
3072-3097
0.005
2
6mer
2761-2780
0.004
0
7mer
3263-3281
0.003
1
7mer
3152-3171
0.002
0
6mer
675-696
0.002
Not Conserved
7mer
1893-1919
0.002
0
6mer
2713-2731
0.001
0
6mer
1337-1357
0.001
1
AL592528.1
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380008
Biotype: antisense
Gene id: ENSG00000205424
Gene Name: AL592528.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2641-2656
0.022
0
6mer
2403-2423
0.002
Not Conserved
6mer
2337-2362
0.001
0
6mer
1851-1868
0.001
0
6mer
1424-1450
0.001
0
CTD-2184C24.2
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000532515
Biotype: antisense
Gene id: ENSG00000254718
Gene Name: CTD-2184C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2428-2447
0.027
0
LINC01015
hsa-miR-149-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434657
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1330-1354
0.011
1
7mer
590-612
0.009
1
6mer
1595-1622
0.002
1
7mer
1429-1444
0.002
1
6mer
449-464
0.001
0
6mer
1353-1378
0.001
1
LINC00479
hsa-miR-149-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000412102
Biotype: lincRNA
Gene id: ENSG00000236384
Gene Name: LINC00479
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-694
0.011
0
6mer
1519-1539
0.004
2
9mer
727-752
0.004
1
7mer
845-866
0.002
1
6mer
283-306
0.002
1
6mer
888-909
0.001
1
7mer
863-886
0.001
1
6mer
731-752
0.001
1
RP11-778O17.4
hsa-miR-149-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000558822
Biotype: antisense
Gene id: ENSG00000259541
Gene Name: RP11-778O17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1635-1658
0.015
1
8mer
854-873
0.004
2
7mer
2015-2030
0.002
Not Conserved
6mer
1374-1401
0.002
1
6mer
1532-1546
0.002
1
6mer
1638-1658
0.002
1
XLOC_001079
hsa-miR-149-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000666
Biotype: transcript isomorph
Gene id: XLOC_001079
Gene Name: XLOC_001079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-146
0.016
0
6mer
34-58
0.007
1
6mer
359-379
0.004
1
AC109826.1
hsa-miR-149-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622970
Biotype: lincRNA
Gene id: ENSG00000226791
Gene Name: AC109826.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-380
0.023
2
6mer
359-383
0.004
1
ADD3-AS1
hsa-miR-149-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038943.1
Biotype: antisense
Gene id: NR_038943.1 (gene)
Gene Name: ADD3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1163-1190
0.027
6
NAV2-AS4
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033989.1
Biotype: antisense
Gene id: NR_033989.1 (gene)
Gene Name: NAV2-AS4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-681
0.016
5
7mer
441-462
0.008
1
6mer
1136-1151
0.003
3
ARAP1-AS1
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000542022
Biotype: antisense
Gene id: ENSG00000256007
Gene Name: ARAP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-157
0.016
3
6mer
217-232
0.006
7
6mer
256-282
0.003
0
6mer
137-154
0.002
3
RP11-299H22.6
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568092
Biotype: lincRNA
Gene id: ENSG00000261296
Gene Name: RP11-299H22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
83-98
0.010
1
6mer
542-569
0.007
1
6mer
1006-1019
0.004
1
6mer
1192-1211
0.003
0
6mer
1022-1032
0.003
1
hsa-mir-1587
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000562814
Biotype: lincRNA
Gene id: ENSG00000261435
Gene Name: hsa-mir-1587
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-377
0.027
2
DBH-AS1
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425189
Biotype: antisense
Gene id: ENSG00000225756
Gene Name: DBH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
797-811
0.011
1
7mer
367-390
0.009
1
7mer
621-646
0.007
2
6mer
977-994
0.001
1
ZNF503-AS1
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000524517
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-693
0.021
1
6mer
471-492
0.003
0
7mer
672-690
0.003
0
KB-1125A3.12
hsa-miR-149-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624923
Biotype: antisense
Gene id: ENSG00000279467
Gene Name: KB-1125A3.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
63-85
0.004
Not Conserved
7mer
5366-5385
0.003
0
7mer
1856-1871
0.002
0
7mer
3062-3080
0.002
0
6mer
691-710
0.002
0
6mer
907-920
0.002
0
6mer
1429-1451
0.002
0
7mer
3601-3620
0.001
0
6mer
1023-1044
0.001
1
6mer
3862-3884
0.001
0
6mer
4297-4314
0.001
0
6mer
4135-4157
0.001
0
9mer
1712-1727
0.001
0
6mer
7005-7021
0.001
0
6mer
7024-7042
0.001
0
6mer
1802-1824
0.001
0
6mer
3342-3363
0.001
1
6mer
6421-6446
0.001
0
6mer
1716-1738
0.000
0
8mer+mismatch
1851-1867
0.000
0
XLOC_005595
hsa-miR-149-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012067
Biotype: transcript isomorph
Gene id: XLOC_005595
Gene Name: XLOC_005595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4308-4329
0.005
1
7mer
1872-1895
0.004
0
6mer
610-628
0.003
1
6mer
200-219
0.003
0
6mer
186-206
0.002
1
6mer
590-614
0.002
1
6mer
575-598
0.002
0
6mer
736-755
0.002
0
6mer
1424-1450
0.002
3
6mer
3597-3614
0.001
1
6mer
1710-1723
0.001
3
CTC-435M10.6
hsa-miR-149-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598887
Biotype: antisense
Gene id: ENSG00000268475
Gene Name: CTC-435M10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-140
0.024
1
7mer
116-137
0.002
2
KMT2E-AS1
hsa-miR-149-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453677
Biotype: antisense
Gene id: ENSG00000239569
Gene Name: KMT2E-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-414
0.014
0
7mer
352-367
0.006
Not Conserved
7mer
94-118
0.004
6
6mer
392-414
0.001
0
6mer
308-331
0.001
1
SCOC-AS1
hsa-miR-149-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512692
Biotype: antisense
Gene id: ENSG00000196951
Gene Name: SCOC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1712-1732
0.015
0
7mer
1082-1102
0.011
1
6mer
996-1018
0.001
2
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