LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
HAND2-AS1
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-386
0.020
1
6mer
2036-2054
0.003
4
6mer
1449-1466
0.002
2
6mer
372-383
0.002
1
6mer
1456-1479
0.000
0
XLOC_011179
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023310
Biotype: transcript isomorph
Gene id: XLOC_011179
Gene Name: XLOC_011179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1137-1156
0.015
1
6mer
790-806
0.012
1
CTD-2049O4.1
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563052
Biotype: antisense
Gene id: ENSG00000261329
Gene Name: CTD-2049O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-531
0.025
1
7mer
509-531
0.002
1
EMX2OS
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1644-1668
0.012
0
8mer
3275-3300
0.004
1
6mer
6383-6408
0.003
2
6mer
5729-5748
0.002
1
7mer
2522-2541
0.001
1
7mer
4822-4844
0.001
0
6mer
1300-1316
0.001
0
6mer
3278-3302
0.001
1
8mer+mismatch
1777-1794
0.001
1
6mer
1466-1484
0.001
0
XLOC_010920
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022618
Biotype: transcript isomorph
Gene id: XLOC_010920
Gene Name: XLOC_010920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1974-1991
0.022
1
7mer
147-166
0.003
2
6mer
177-195
0.001
2
RP11-154D6.1
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591156
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-276
0.027
0
PARD6G-AS1
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586421
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2958-2980
0.015
1
7mer
967-991
0.005
1
8mer
2820-2840
0.004
0
7mer
775-797
0.003
1
8mer+mismatch
1549-1563
0.001
Not Conserved
XLOC_000808
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000509
Biotype: transcript isomorph
Gene id: XLOC_000808
Gene Name: XLOC_000808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
150-168
0.027
1
LINC00634
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_024355.1
Biotype: lincRNA
Gene id: NR_024355.1 (gene)
Gene Name: LINC00634
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
690-704
0.006
1
7mer
1234-1251
0.005
0
9mer
1270-1293
0.005
1
8mer
1197-1220
0.005
1
7mer
582-597
0.003
0
7mer
478-500
0.002
3
8mer
1270-1289
0.002
0
XLOC_013699
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028349
Biotype: transcript isomorph
Gene id: XLOC_013699
Gene Name: XLOC_013699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-57
0.025
1
6mer
36-62
0.002
1
UGDH-AS1
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504032
Biotype: antisense
Gene id: ENSG00000249348
Gene Name: UGDH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
898-918
0.012
0
7mer
1098-1120
0.008
0
6mer
119-145
0.003
2
6mer
472-497
0.002
0
6mer
373-387
0.002
0
DOCK9-AS2
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000562781
Biotype: antisense
Gene id: ENSG00000260992
Gene Name: DOCK9-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-669
0.019
1
6mer
674-687
0.004
1
6mer
514-533
0.002
1
6mer
78-91
0.002
0
XLOC_012199
hsa-miR-149-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025386
Biotype: transcript isomorph
Gene id: XLOC_012199
Gene Name: XLOC_012199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-372
0.024
1
6mer
619-635
0.003
0
AL133493.2
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5728-5753
0.005
1
6mer
14-39
0.004
1
7mer
3257-3272
0.002
1
6mer
4181-4193
0.002
1
6mer
4013-4029
0.002
1
6mer
1634-1651
0.002
1
6mer
2339-2358
0.001
1
6mer
5460-5476
0.001
1
6mer
4995-5017
0.001
0
7mer
3371-3392
0.001
0
7mer
2945-2972
0.001
Not Conserved
6mer
5152-5171
0.001
1
6mer
1467-1485
0.001
0
6mer
2821-2839
0.001
1
6mer
1170-1188
0.001
0
6mer
1196-1220
0.001
0
7mer
5469-5488
0.001
0
6mer
5033-5049
0.001
1
XLOC_012147
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025335
Biotype: transcript isomorph
Gene id: XLOC_012147
Gene Name: XLOC_012147
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
579-598
0.004
0
6mer
1327-1345
0.001
0
PCBP1-AS1
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604346
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-81
0.013
1
8mer
58-81
0.009
1
6mer
648-665
0.004
0
HAND2-AS1
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-389
0.020
1
6mer
2039-2057
0.003
4
6mer
1452-1469
0.002
2
6mer
375-386
0.002
1
6mer
1459-1482
0.000
0
RP11-457M11.7
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616994
Biotype: lincRNA
Gene id: ENSG00000275846
Gene Name: RP11-457M11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3101-3115
0.025
1
6mer
1260-1285
0.001
1
RP11-2C24.7
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621583
Biotype: lincRNA
Gene id: ENSG00000274678
Gene Name: RP11-2C24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
423-448
0.027
0
RP11-473I1.6
hsa-miR-149-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562893
Biotype: lincRNA
Gene id: ENSG00000261392
Gene Name: RP11-473I1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-483
0.013
1
6mer
607-617
0.005
1
6mer
288-310
0.005
1
6mer
87-112
0.002
Not Conserved
6mer
264-278
0.002
1
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