LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-149-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-420A6.2
hsa-miR-149-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572792
Biotype: antisense
Gene id: ENSG00000263220
Gene Name: RP11-420A6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-117
0.027
1
RP5-998N21.4
hsa-miR-149-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415338
Biotype: lincRNA
Gene id: ENSG00000234571
Gene Name: RP5-998N21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1500-1523
0.027
2
CTC-254B4.1
hsa-miR-149-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505997
Biotype: lincRNA
Gene id: ENSG00000251027
Gene Name: CTC-254B4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-68
0.017
5
6mer
105-124
0.008
5
6mer
469-490
0.002
1
RP11-1124B17.1
hsa-miR-149-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577573
Biotype: lincRNA
Gene id: ENSG00000264026
Gene Name: RP11-1124B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-729
0.017
0
7mer
147-162
0.007
3
7mer
1140-1167
0.002
1
6mer
706-726
0.001
0
CTD-2369P2.8
hsa-miR-149-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589379
Biotype: antisense
Gene id: ENSG00000267607
Gene Name: CTD-2369P2.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3181-3202
0.010
1
7mer
3176-3186
0.007
1
6mer
2555-2574
0.003
1
6mer
837-857
0.002
3
6mer
2407-2429
0.001
1
6mer
2542-2558
0.001
1
7mer
1643-1662
0.001
2
6mer
1692-1708
0.001
1
8mer+mismatch
1607-1628
0.001
5
LOC642846
hsa-miR-149-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024374.1
Biotype: lincRNA
Gene id: NR_024374.1 (gene)
Gene Name: LOC642846
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3288-3311
0.013
2
9mer
3155-3171
0.009
0
7mer
3151-3167
0.003
0
6mer
999-1022
0.001
4
6mer
3332-3354
0.001
1
FAM138C
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000305248
Biotype: lincRNA
Gene id: ENSG00000218839
Gene Name: FAM138C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-576
0.017
0
6mer
227-249
0.006
1
6mer
240-257
0.004
1
RP11-164C12.2
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556708
Biotype: lincRNA
Gene id: ENSG00000258909
Gene Name: RP11-164C12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1924-1944
0.011
1
7mer
1670-1685
0.008
2
6mer
2212-2235
0.004
Not Conserved
6mer
1938-1963
0.002
1
6mer
1572-1591
0.001
0
6mer
1065-1084
0.001
1
RP5-1180C10.2
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037642.1
Biotype: sense
Gene id: NR_037642.1 (gene)
Gene Name: RP5-1180C10.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
246-261
0.011
2
8mer
1647-1668
0.006
0
7mer
1299-1321
0.003
0
6mer
1826-1851
0.002
6
7mer
1466-1490
0.002
1
6mer
250-267
0.002
1
6mer
1480-1506
0.001
2
6mer
1658-1677
0.001
1
RP11-1096D5.1
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000567801
Biotype: lincRNA
Gene id: ENSG00000260440
Gene Name: RP11-1096D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
595-620
0.008
0
8mer
3136-3157
0.005
0
7mer
519-537
0.004
1
7mer
1786-1804
0.004
1
6mer
3937-3958
0.001
0
6mer
2293-2312
0.001
1
6mer
2437-2459
0.001
1
6mer
593-616
0.001
0
6mer
3292-3308
0.001
0
8mer
3292-3314
0.001
0
RP11-90P5.5
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000476186
Biotype: antisense
Gene id: ENSG00000240015
Gene Name: RP11-90P5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
52-69
0.014
1
6mer
277-299
0.008
1
6mer
424-439
0.005
0
RP11-503P10.1
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607407
Biotype: antisense
Gene id: ENSG00000272056
Gene Name: RP11-503P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
164-185
0.027
2
RP11-523L20.2
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565451
Biotype: lincRNA
Gene id: ENSG00000261231
Gene Name: RP11-523L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-109
0.018
0
8mer+mismatch
494-518
0.006
1
6mer
352-374
0.004
1
RP11-391M7.3
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446888
Biotype: antisense
Gene id: ENSG00000231138
Gene Name: RP11-391M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
447-469
0.016
2
7mer
734-749
0.008
0
6mer
587-605
0.003
0
RP11-420N3.3
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569895
Biotype: processed_transcript
Gene id: ENSG00000279877
Gene Name: RP11-420N3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-174
0.025
Not Conserved
6mer
349-374
0.002
1
AC018647.3
hsa-miR-149-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430518
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
622-644
0.027
2
RP11-504P24.8
hsa-miR-149-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
103-123
0.006
Not Conserved
6mer
221-245
0.006
1
6mer
703-718
0.004
1
6mer
1936-1954
0.003
0
6mer
413-432
0.003
0
6mer
576-592
0.002
0
6mer
300-317
0.001
Not Conserved
6mer
376-397
0.001
Not Conserved
6mer
894-910
0.001
Not Conserved
LINC00324
hsa-miR-149-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000315707
Biotype: lincRNA
Gene id: ENSG00000178977
Gene Name: LINC00324
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1210-1237
0.014
Not Conserved
8mer
1686-1708
0.013
1
LINC01252
hsa-miR-149-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499291
Biotype: lincRNA
Gene id: ENSG00000247157
Gene Name: LINC01252
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
629-649
0.010
0
8mer
993-1013
0.008
0
6mer
3013-3033
0.004
1
6mer
1380-1391
0.002
0
6mer
395-412
0.002
1
6mer
2642-2665
0.001
0
LINC00662
hsa-miR-149-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000561521
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2388-2412
0.027
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept