LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-7F17.5
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500215
Biotype: lincRNA
Gene id: ENSG00000246548
Gene Name: RP11-7F17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2320-2341
0.015
2
9mer
1868-1890
0.006
1
6mer
26-51
0.003
2
6mer
1594-1611
0.001
1
6mer
1086-1107
0.001
0
6mer
923-941
0.001
1
RP11-14O19.2
hsa-miR-149-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427695
Biotype: lincRNA
Gene id: ENSG00000237954
Gene Name: RP11-14O19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-312
0.028
3
SLC16A1-AS1
hsa-miR-149-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103743.1
Biotype: antisense
Gene id: NR_103743.1 (gene)
Gene Name: SLC16A1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1091-1112
0.009
1
7mer
1105-1128
0.007
Not Conserved
7mer
1058-1082
0.007
1
7mer
371-395
0.005
1
FAM138B
hsa-miR-149-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432583
Biotype: lincRNA
Gene id: ENSG00000226516
Gene Name: FAM138B
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-105
0.016
0
6mer
413-435
0.004
1
6mer
1042-1060
0.004
1
6mer
405-422
0.003
1
XLOC_004292
hsa-miR-149-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009873
Biotype: transcript isomorph
Gene id: XLOC_004292
Gene Name: XLOC_004292
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
469-494
0.020
4
6mer
122-149
0.005
2
6mer
520-538
0.003
2
FAM138F
hsa-miR-149-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026820.1
Biotype: lincRNA
Gene id: NR_026820.1 (gene)
Gene Name: FAM138F
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1026-1045
0.018
0
6mer
696-718
0.004
0
6mer
709-726
0.003
0
6mer
173-191
0.002
Not Conserved
CTA-397C4.2
hsa-miR-149-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415702
Biotype: lincRNA
Gene id: ENSG00000232655
Gene Name: CTA-397C4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-425
0.028
1
RP11-359E10.1
hsa-miR-149-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000603468
Biotype: lincRNA
Gene id: ENSG00000270607
Gene Name: RP11-359E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-183
0.010
1
8mer
1186-1209
0.006
3
6mer
1408-1429
0.005
5
6mer
89-114
0.004
1
6mer
1022-1046
0.002
0
RP11-96D1.10
hsa-miR-149-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571975
Biotype: sense_overlapping
Gene id: ENSG00000263276
Gene Name: RP11-96D1.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-364
0.007
1
7mer
583-606
0.007
Not Conserved
6mer
482-498
0.004
1
7mer
1698-1715
0.003
2
7mer
1093-1112
0.003
1
6mer
317-332
0.002
1
6mer
595-616
0.001
1
SNHG14
hsa-miR-149-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5172-5199
0.008
3
7mer
2957-2971
0.007
1
6mer
7705-7729
0.005
3
7mer
2708-2728
0.004
0
6mer
4251-4267
0.001
1
6mer
3969-3983
0.001
1
EMX2OS
hsa-miR-149-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1644-1668
0.013
0
8mer
3275-3300
0.004
1
6mer
6383-6408
0.003
2
6mer
5729-5748
0.002
1
7mer
2522-2541
0.001
1
7mer
4822-4844
0.001
0
6mer
1300-1316
0.001
0
6mer
3278-3302
0.001
1
8mer+mismatch
1777-1794
0.001
1
6mer
1466-1484
0.001
0
FAM138B
hsa-miR-149-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446648
Biotype: lincRNA
Gene id: ENSG00000226516
Gene Name: FAM138B
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-105
0.016
0
6mer
413-435
0.004
1
6mer
940-958
0.004
1
6mer
405-422
0.003
1
LINC01197
hsa-miR-149-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555332
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2047-2068
0.015
1
7mer
244-270
0.011
Not Conserved
7mer
1391-1413
0.001
0
GAS6-AS1
hsa-miR-149-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458001
Biotype: antisense
Gene id: ENSG00000233695
Gene Name: GAS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6584-6598
0.010
1
7mer
3639-3660
0.004
0
6mer
21-46
0.004
1
6mer
171-192
0.003
1
7mer
573-595
0.003
Not Conserved
6mer
973-990
0.002
1
6mer
1570-1596
0.001
4
7mer
5103-5124
0.001
1
7mer
4572-4597
0.000
Not Conserved
6mer
4376-4394
0.000
1
7mer
4597-4616
0.000
Not Conserved
RP3-470B24.5
hsa-miR-149-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000538528
Biotype: lincRNA
Gene id: ENSG00000235994
Gene Name: RP3-470B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
324-340
0.006
Not Conserved
6mer
577-592
0.004
1
6mer
619-634
0.003
0
6mer
661-676
0.002
0
6mer
367-382
0.002
0
6mer
409-424
0.002
0
6mer
535-550
0.002
0
6mer
451-466
0.002
1
6mer
282-297
0.002
0
6mer
748-769
0.002
1
6mer
493-508
0.002
1
6mer
703-721
0.001
0
XLOC_005958
hsa-miR-149-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012843
Biotype: transcript isomorph
Gene id: XLOC_005958
Gene Name: XLOC_005958
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-429
0.008
1
6mer
2918-2945
0.004
3
8mer
1283-1299
0.004
1
8mer
651-675
0.003
1
7mer
859-878
0.003
1
6mer
244-263
0.002
2
6mer
3315-3333
0.001
1
6mer
2548-2573
0.001
1
7mer
2562-2582
0.001
1
7mer
1824-1846
0.001
1
XLOC_012588
hsa-miR-149-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025782
Biotype: transcript isomorph
Gene id: XLOC_012588
Gene Name: XLOC_012588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-389
0.008
Not Conserved
8mer+wobble
1552-1571
0.006
Not Conserved
7mer
135-161
0.002
Not Conserved
7mer
1176-1193
0.002
Not Conserved
6mer
708-722
0.002
Not Conserved
7mer
963-978
0.002
Not Conserved
7mer
904-925
0.001
Not Conserved
6mer
854-877
0.001
Not Conserved
7mer
645-660
0.001
Not Conserved
6mer
995-1009
0.001
Not Conserved
6mer
956-978
0.001
Not Conserved
XLOC_010903
hsa-miR-149-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022597
Biotype: transcript isomorph
Gene id: XLOC_010903
Gene Name: XLOC_010903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-494
0.011
1
6mer
305-321
0.006
1
7mer
365-385
0.005
1
6mer
165-188
0.003
0
6mer
15-33
0.002
0
AC005154.6
hsa-miR-149-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454922
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
959-970
0.026
1
6mer
674-696
0.001
Not Conserved
XLOC_000022
hsa-miR-149-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2276-2299
0.010
0
6mer
29-54
0.003
0
7mer
2951-2974
0.003
1
6mer
1041-1059
0.002
1
6mer
3439-3464
0.002
1
6mer
1459-1479
0.002
2
6mer
4162-4176
0.002
0
7mer
2441-2460
0.001
1
6mer
3616-3632
0.001
0
7mer
2624-2648
0.001
1
6mer
2454-2472
0.000
0
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