LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP5-1056H1.2
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619370
Biotype: lincRNA
Gene id: ENSG00000278192
Gene Name: RP5-1056H1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-223
0.012
0
7mer
316-336
0.006
0
6mer
1700-1722
0.004
0
6mer
1713-1731
0.003
0
6mer
1564-1580
0.003
0
COLCA1
hsa-miR-149-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000620864
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7058-7071
0.013
3
8mer
2450-2474
0.006
0
6mer
554-572
0.002
1
6mer
1166-1188
0.001
1
6mer
5803-5821
0.001
1
6mer
6978-6999
0.001
4
6mer
6084-6100
0.001
1
6mer
4680-4690
0.001
0
8mer
6078-6092
0.001
1
6mer
5759-5780
0.000
1
LINC00315
hsa-miR-149-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441947
Biotype: lincRNA
Gene id: ENSG00000184274
Gene Name: LINC00315
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1982-1997
0.016
0
6mer
1006-1030
0.003
1
7mer
682-697
0.003
Not Conserved
7mer
1450-1474
0.002
0
7mer
1837-1862
0.002
1
6mer
431-444
0.002
1
6mer
1315-1337
0.001
0
LOXL1-AS1
hsa-miR-149-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568087
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
125-137
0.004
1
6mer
288-310
0.002
1
RP3-431P23.5
hsa-miR-149-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000597278
Biotype: lincRNA
Gene id: ENSG00000269155
Gene Name: RP3-431P23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-276
0.010
0
7mer
50-75
0.005
0
7mer
2338-2353
0.005
0
7mer
1250-1266
0.003
1
7mer
853-869
0.002
0
7mer
1619-1641
0.001
1
6mer
1596-1614
0.001
Not Conserved
6mer
1647-1668
0.001
Not Conserved
PDZK1P2
hsa-miR-149-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000401008
Biotype: lincRNA
Gene id: ENSG00000215859
Gene Name: PDZK1P2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3152-3165
0.016
Not Conserved
7mer
2996-3015
0.006
Not Conserved
7mer
580-596
0.005
1
6mer
2950-2976
0.001
Not Conserved
CYP4F35P
hsa-miR-149-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578285
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
526-552
0.023
0
6mer
599-621
0.004
0
XLOC_003411
hsa-miR-149-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008728
Biotype: transcript isomorph
Gene id: XLOC_003411
Gene Name: XLOC_003411
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4689-4714
0.013
1
7mer
1107-1126
0.006
1
6mer
5052-5077
0.004
1
6mer
3909-3924
0.001
0
7mer
1252-1266
0.001
0
6mer
2466-2482
0.001
0
6mer
3036-3055
0.001
0
LINC01529
hsa-miR-149-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000433059
Biotype: lincRNA
Gene id: ENSG00000225872
Gene Name: LINC01529
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-388
0.008
4
7mer
1792-1816
0.005
1
6mer
28-47
0.004
0
6mer
1958-1975
0.003
4
7mer
1587-1606
0.003
0
6mer
1327-1350
0.002
4
7mer
1949-1975
0.002
0
XLOC_013189
hsa-miR-149-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026758
Biotype: transcript isomorph
Gene id: XLOC_013189
Gene Name: XLOC_013189
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1025-1044
0.018
0
6mer
695-717
0.004
0
6mer
708-725
0.003
0
6mer
172-190
0.002
Not Conserved
RP5-905H7.11
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000615248
Biotype: lincRNA
Gene id: ENSG00000230000
Gene Name: RP5-905H7.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2082-2097
0.027
0
6mer
1012-1029
0.001
0
XLOC_007218
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014536
Biotype: transcript isomorph
Gene id: XLOC_007218
Gene Name: XLOC_007218
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
842-863
0.010
0
7mer
1059-1083
0.006
1
6mer
206-219
0.005
1
6mer
704-728
0.005
1
6mer
167-185
0.003
1
PCAT19
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
59-74
0.015
1
7mer
2423-2445
0.011
1
7mer
393-416
0.003
Not Conserved
AC083949.1
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422013
Biotype: antisense
Gene id: ENSG00000224875
Gene Name: AC083949.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-555
0.025
0
6mer
349-363
0.002
0
FAM138F
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448235
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1102
0.018
0
6mer
753-775
0.004
0
6mer
766-783
0.003
0
6mer
230-248
0.003
Not Conserved
MORF4L2-AS1
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435306
Biotype: antisense
Gene id: ENSG00000231154
Gene Name: MORF4L2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-420
0.021
1
7mer
415-427
0.007
1
LINC00824
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520206
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
843-864
0.010
0
7mer
1060-1084
0.006
1
6mer
207-220
0.005
1
6mer
705-729
0.005
1
6mer
168-186
0.003
1
RP11-420N3.2
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000585867
Biotype: lincRNA
Gene id: ENSG00000260411
Gene Name: RP11-420N3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-161
0.025
Not Conserved
6mer
336-361
0.002
1
AC096574.5
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417947
Biotype: lincRNA
Gene id: ENSG00000227107
Gene Name: AC096574.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1851-1872
0.020
1
8mer
1844-1869
0.008
1
RAB6C-AS1
hsa-miR-149-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_036537.1
Biotype: antisense
Gene id: NR_036537.1 (gene)
Gene Name: RAB6C-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2016-2040
0.018
0
7mer
311-321
0.008
Not Conserved
6mer
2174-2191
0.001
0
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