LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LA16c-358B7.3
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568106
Biotype: antisense
Gene id: ENSG00000261505
Gene Name: LA16c-358B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
854-879
0.008
1
7mer
347-361
0.005
0
6mer
2896-2918
0.002
0
6mer
135-151
0.002
0
8mer+wobble
1545-1567
0.002
0
6mer
2628-2649
0.002
0
6mer
2272-2288
0.001
1
6mer
2407-2423
0.001
0
6mer
2439-2457
0.001
0
7mer
1869-1895
0.001
1
8mer
1477-1495
0.001
1
6mer
2163-2185
0.001
1
6mer
837-852
0.001
0
6mer
1480-1504
0.000
1
RP11-675F6.4
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519764
Biotype: lincRNA
Gene id: ENSG00000254100
Gene Name: RP11-675F6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-407
0.014
3
9mer
377-393
0.007
1
7mer
356-374
0.004
4
6mer
362-385
0.002
3
LINC00173
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000480237
Biotype: lincRNA
Gene id: ENSG00000196668
Gene Name: LINC00173
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-419
0.007
0
7mer
196-215
0.005
4
6mer
1539-1558
0.004
1
7mer
467-483
0.004
5
7mer
407-430
0.003
1
7mer
457-478
0.003
2
6mer
118-141
0.002
Not Conserved
6mer
204-228
0.001
0
RP11-177H13.2
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519692
Biotype: antisense
Gene id: ENSG00000253837
Gene Name: RP11-177H13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-152
0.007
0
7mer
142-157
0.004
0
6mer
4007-4030
0.004
1
6mer
122-137
0.003
4
8mer
3383-3401
0.002
1
6mer
1679-1702
0.002
3
6mer
2225-2247
0.001
1
6mer
3266-3290
0.001
1
6mer
2368-2383
0.001
1
6mer
3277-3302
0.001
1
GATA3-AS1
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000355358
Biotype: lincRNA
Gene id: ENSG00000197308
Gene Name: GATA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-736
0.015
6
8mer
232-252
0.009
5
7mer
1026-1044
0.003
4
7mer
700-723
0.002
4
LINC01164
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000341866
Biotype: lincRNA
Gene id: ENSG00000189275
Gene Name: LINC01164
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-94
0.014
0
9mer
968-984
0.009
1
8mer
134-154
0.003
0
6mer
2487-2514
0.001
1
RHPN1-AS1
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518049
Biotype: antisense
Gene id: ENSG00000254389
Gene Name: RHPN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-71
0.012
1
6mer
1318-1336
0.004
3
6mer
619-635
0.003
1
7mer
1571-1593
0.003
0
6mer
1869-1891
0.002
Not Conserved
6mer
773-792
0.002
1
7mer
946-971
0.002
0
6mer
528-551
0.001
1
RP11-321L2.1
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423440
Biotype: lincRNA
Gene id: ENSG00000231460
Gene Name: RP11-321L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-544
0.006
0
7mer
1113-1132
0.005
1
6mer
354-381
0.005
2
7mer
863-889
0.004
1
6mer
863-882
0.003
1
6mer
1309-1323
0.002
3
6mer
522-541
0.002
1
6mer
541-566
0.001
3
6mer
536-559
0.001
0
XLOC_000630
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002266
Biotype: transcript isomorph
Gene id: XLOC_000630
Gene Name: XLOC_000630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
477-495
0.016
1
6mer
400-416
0.012
1
CTD-2377D24.6
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000478824
Biotype: lincRNA
Gene id: ENSG00000244649
Gene Name: CTD-2377D24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
950-966
0.017
1
6mer
39-57
0.005
2
6mer
333-349
0.003
1
6mer
653-665
0.003
1
XLOC_009198
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019373
Biotype: transcript isomorph
Gene id: XLOC_009198
Gene Name: XLOC_009198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-347
0.023
1
6mer
323-344
0.005
1
AC007682.1
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440698
Biotype: lincRNA
Gene id: ENSG00000231918
Gene Name: AC007682.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3501-3522
0.012
0
6mer
3814-3836
0.007
1
6mer
3336-3355
0.004
2
6mer
2864-2883
0.002
Not Conserved
7mer
1548-1566
0.001
Not Conserved
6mer
1029-1051
0.001
0
6mer
1004-1019
0.001
0
LINC00184
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429269
Biotype: lincRNA
Gene id: ENSG00000224939
Gene Name: LINC00184
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-162
0.015
2
7mer
1827-1844
0.013
1
RP11-216N14.9
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434575
Biotype: antisense
Gene id: ENSG00000233222
Gene Name: RP11-216N14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-82
0.028
1
RP11-317N12.1
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521541
Biotype: lincRNA
Gene id: ENSG00000253642
Gene Name: RP11-317N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-644
0.012
1
7mer
322-337
0.008
Not Conserved
7mer
186-203
0.008
0
XLOC_000623
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000010
Biotype: transcript isomorph
Gene id: XLOC_000623
Gene Name: XLOC_000623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-162
0.015
2
7mer
1827-1844
0.013
1
NAV2-AS4
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532874
Biotype: antisense
Gene id: ENSG00000254622
Gene Name: NAV2-AS4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-684
0.017
5
7mer
444-465
0.008
1
6mer
1139-1154
0.003
3
LOXL1-AS1
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562739
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
415-437
0.003
1
6mer
251-274
0.002
0
PCAT29
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558411
Biotype: lincRNA
Gene id: ENSG00000259641
Gene Name: PCAT29
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
443-455
0.028
1
RP3-329A5.8
hsa-miR-149-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605896
Biotype: lincRNA
Gene id: ENSG00000272374
Gene Name: RP3-329A5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3906-3919
0.006
1
6mer
190-215
0.005
2
6mer
233-248
0.004
0
6mer
4018-4035
0.003
Not Conserved
6mer
4185-4203
0.003
0
7mer
2174-2195
0.002
4
6mer
2937-2948
0.002
1
6mer
2577-2599
0.001
0
6mer
1536-1560
0.001
1
6mer
2724-2743
0.001
0
6mer
2496-2510
0.000
0
6mer
2476-2499
0.000
0
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