LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
MIR3179-3
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000552753
Biotype: lincRNA
Gene id: ENSG00000257527
Gene Name: MIR3179-3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-410
0.028
4
XLOC_007904
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016518
Biotype: transcript isomorph
Gene id: XLOC_007904
Gene Name: XLOC_007904
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-264
0.019
0
7mer
1770-1791
0.003
0
7mer
459-476
0.003
0
6mer
226-248
0.002
0
6mer
887-904
0.001
1
XLOC_012590
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025256
Biotype: transcript isomorph
Gene id: XLOC_012590
Gene Name: XLOC_012590
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2247-2265
0.016
0
7mer
337-360
0.006
Not Conserved
7mer
2846-2871
0.004
1
6mer
327-342
0.002
Not Conserved
6mer
1496-1512
0.001
Not Conserved
RP11-14O19.2
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426881
Biotype: lincRNA
Gene id: ENSG00000237954
Gene Name: RP11-14O19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-318
0.028
3
C1orf145
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_073155.1
Biotype: sense
Gene id: NR_073155.1 (gene)
Gene Name: C1orf145
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-303
0.013
1
8mer
531-553
0.013
1
6mer
299-318
0.002
1
XLOC_012535
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025245
Biotype: transcript isomorph
Gene id: XLOC_012535
Gene Name: XLOC_012535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5527-5551
0.016
2
7mer
4304-4329
0.004
2
6mer
5606-5618
0.002
0
6mer
5600-5615
0.002
1
7mer
5829-5850
0.002
Not Conserved
6mer
5530-5551
0.001
3
6mer
1497-1515
0.001
1
LINC01460
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000379677
Biotype: lincRNA
Gene id: ENSG00000205334
Gene Name: LINC01460
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
600-621
0.019
5
6mer
604-621
0.002
5
7mer
502-523
0.002
1
6mer
934-952
0.002
0
6mer
495-512
0.001
4
6mer
795-815
0.001
1
RP11-159D12.10
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584805
Biotype: lincRNA
Gene id: ENSG00000266290
Gene Name: RP11-159D12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5769-5793
0.016
2
7mer
4546-4571
0.004
2
6mer
5848-5860
0.002
0
6mer
5842-5857
0.002
1
7mer
6071-6092
0.002
Not Conserved
6mer
5772-5793
0.001
3
6mer
1739-1757
0.001
1
LINC01000
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
272-291
0.003
0
6mer
282-304
0.002
0
6mer
640-655
0.002
1
8mer+wobble
4135-4155
0.002
0
6mer
8272-8294
0.002
0
6mer
447-464
0.001
Not Conserved
7mer
4567-4593
0.001
1
6mer
766-782
0.001
0
6mer
8603-8619
0.001
0
7mer
6862-6887
0.001
0
7mer
2808-2824
0.001
0
6mer
4013-4037
0.001
1
6mer
3300-3321
0.001
0
6mer
1456-1476
0.001
0
6mer
5632-5657
0.001
0
7mer
1548-1574
0.001
Not Conserved
6mer
3575-3592
0.001
0
6mer
6649-6674
0.001
0
6mer
1811-1830
0.001
Not Conserved
6mer
3798-3817
0.001
0
7mer
2847-2873
0.001
1
6mer
7784-7808
0.001
0
7mer
2896-2922
0.000
0
6mer
2449-2468
0.000
0
6mer
2000-2022
0.000
0
6mer
2503-2525
0.000
0
6mer
1926-1943
0.000
Not Conserved
8mer+mismatch
2732-2758
0.000
0
6mer
3714-3730
0.000
0
6mer
2717-2740
0.000
Not Conserved
6mer
2745-2765
0.000
0
6mer
1846-1867
0.000
Not Conserved
6mer
3639-3655
0.000
Not Conserved
SMCR5
hsa-miR-149-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000543475
Biotype: antisense
Gene id: ENSG00000226746
Gene Name: SMCR5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2800-2819
0.011
2
9mer
2182-2209
0.010
1
6mer
1616-1632
0.002
2
7mer
2711-2737
0.002
0
6mer
2186-2209
0.002
1
6mer
2625-2643
0.001
0
LINC01007
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434537
Biotype: lincRNA
Gene id: ENSG00000233123
Gene Name: LINC01007
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1979-2003
0.009
3
6mer
11-27
0.007
3
7mer
1608-1629
0.006
1
6mer
164-179
0.003
2
6mer
680-697
0.002
1
7mer
561-582
0.001
1
PART1
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515734
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-175
0.024
4
6mer
850-860
0.002
3
6mer
1141-1162
0.002
4
LINC01276
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448211
Biotype: lincRNA
Gene id: ENSG00000226917
Gene Name: LINC01276
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-498
0.018
5
8mer
241-260
0.006
1
7mer
355-370
0.004
1
XLOC_004053
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-709
0.005
0
6mer
1235-1252
0.003
1
7mer
804-822
0.003
1
6mer
940-963
0.003
1
6mer
3203-3220
0.003
0
6mer
627-646
0.002
0
6mer
2595-2615
0.002
1
6mer
1071-1085
0.002
1
6mer
720-746
0.002
0
6mer
2787-2804
0.001
0
6mer
2608-2627
0.001
0
XLOC_009445
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019641
Biotype: transcript isomorph
Gene id: XLOC_009445
Gene Name: XLOC_009445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-459
0.008
0
8mer
2349-2362
0.007
0
7mer
3518-3543
0.004
0
6mer
5383-5401
0.003
0
6mer
133-157
0.003
Not Conserved
6mer
2454-2479
0.002
0
8mer
2440-2460
0.001
0
RP11-379P15.1
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
602-625
0.014
Not Conserved
6mer
324-344
0.003
3
6mer
469-492
0.003
1
6mer
113-134
0.002
1
7mer
2114-2132
0.002
1
8mer
2118-2135
0.002
2
6mer
821-847
0.001
0
FLJ32255
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-582
0.009
0
8mer+wobble
848-865
0.009
0
6mer
160-183
0.007
0
6mer
1268-1285
0.002
0
SPACA6P
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000572565
Biotype: retained_intron
Gene id: ENSG00000182310
Gene Name: SPACA6P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
971-985
0.012
5
7mer
1004-1022
0.003
3
7mer
1261-1286
0.003
1
6mer
203-219
0.003
3
7mer
1192-1210
0.002
0
7mer
1044-1059
0.002
1
6mer
1120-1133
0.001
0
7mer
1152-1173
0.001
Not Conserved
XLOC_008724
hsa-miR-149-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017728
Biotype: transcript isomorph
Gene id: XLOC_008724
Gene Name: XLOC_008724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-736
0.015
6
8mer
232-252
0.009
5
7mer
1026-1044
0.003
4
7mer
700-723
0.002
4
XLOC_000730
hsa-miR-149-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5547-5562
0.006
1
7mer
940-958
0.004
0
6mer
5555-5568
0.004
1
7mer
1849-1875
0.003
2
6mer
3689-3706
0.002
1
6mer
4919-4939
0.002
1
6mer
3930-3952
0.002
1
6mer
5659-5683
0.002
1
8mer
4266-4285
0.002
1
6mer
2800-2814
0.001
0
6mer
3563-3581
0.001
Not Conserved
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