LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-296O14.3
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367716
Biotype: antisense
Gene id: ENSG00000203739
Gene Name: RP11-296O14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-133
0.012
0
8mer
1032-1057
0.007
0
7mer
1145-1162
0.003
1
7mer
856-870
0.003
1
6mer
786-812
0.001
1
6mer
1150-1162
0.001
0
6mer
1121-1138
0.001
0
PDCD4-AS1
hsa-miR-149-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026932.1
Biotype: lincRNA
Gene id: NR_026932.1 (gene)
Gene Name: PDCD4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
568-589
0.010
3
7mer
1647-1667
0.008
1
6mer
231-251
0.004
2
6mer
1482-1504
0.003
0
6mer
1129-1149
0.002
1
6mer
980-990
0.001
1
XLOC_013998
hsa-miR-149-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029076
Biotype: transcript isomorph
Gene id: XLOC_013998
Gene Name: XLOC_013998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
349-364
0.014
1
6mer
482-496
0.012
1
6mer
514-539
0.002
Not Conserved
CTD-2537I9.16
hsa-miR-149-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596646
Biotype: antisense
Gene id: ENSG00000269859
Gene Name: CTD-2537I9.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-350
0.028
Not Conserved
KB-1269D1.9
hsa-miR-149-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624496
Biotype: antisense
Gene id: ENSG00000278956
Gene Name: KB-1269D1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-580
0.018
5
7mer
375-392
0.006
1
6mer
744-762
0.003
0
6mer
264-283
0.002
0
XLOC_000280
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001014
Biotype: transcript isomorph
Gene id: XLOC_000280
Gene Name: XLOC_000280
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-464
0.028
5
LOXL1-AS1
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562130
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
155-178
0.003
0
6mer
319-341
0.003
1
HCG18
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000438412
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1409-1427
0.009
1
7mer
1498-1520
0.008
1
6mer
2400-2421
0.005
1
6mer
2013-2031
0.003
1
6mer
1083-1098
0.002
2
6mer
1412-1431
0.001
1
XLOC_012582
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025772
Biotype: transcript isomorph
Gene id: XLOC_012582
Gene Name: XLOC_012582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1477-1497
0.020
0
7mer
1116-1137
0.008
0
RP3-467K16.4
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1241-1264
0.004
0
6mer
243-267
0.004
1
6mer
599-615
0.003
1
6mer
4967-4991
0.003
1
6mer
4026-4048
0.002
1
6mer
1682-1703
0.002
1
6mer
766-787
0.002
1
6mer
734-744
0.001
0
7mer
1358-1381
0.001
1
6mer
1504-1524
0.001
1
6mer
3421-3437
0.001
1
6mer
2041-2055
0.001
0
6mer
1873-1895
0.001
1
6mer
3588-3606
0.001
0
6mer
1245-1272
0.001
0
6mer
3556-3581
0.000
0
6mer
2022-2042
0.000
1
AC012594.1
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457834
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-651
0.022
0
6mer
619-644
0.006
1
RP5-1172A22.1
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000444114
Biotype: lincRNA
Gene id: ENSG00000233521
Gene Name: RP5-1172A22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-596
0.016
2
6mer
253-273
0.005
0
6mer
120-143
0.004
1
6mer
444-466
0.003
1
RP11-1038A11.3
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537714
Biotype: lincRNA
Gene id: ENSG00000256417
Gene Name: RP11-1038A11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-541
0.028
1
RP11-15H20.6
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596483
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
534-550
0.015
1
6mer
566-581
0.011
1
6mer
459-474
0.003
0
C21orf15
hsa-miR-149-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026755.1
Biotype: lincRNA
Gene id: NR_026755.1 (gene)
Gene Name: C21orf15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
111-137
0.023
0
6mer
42-64
0.006
0
XLOC_007301
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015656
Biotype: transcript isomorph
Gene id: XLOC_007301
Gene Name: XLOC_007301
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-541
0.006
0
7mer
1110-1129
0.005
1
6mer
351-378
0.005
2
7mer
860-886
0.004
1
6mer
860-879
0.003
1
6mer
1306-1320
0.002
3
6mer
519-538
0.002
1
6mer
538-563
0.001
3
6mer
533-556
0.001
0
XLOC_002540
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004626
Biotype: transcript isomorph
Gene id: XLOC_002540
Gene Name: XLOC_002540
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
156-174
0.025
0
6mer
471-487
0.003
0
AP006285.6
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000436539
Biotype: lincRNA
Gene id: ENSG00000227306
Gene Name: AP006285.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-325
0.024
1
6mer
186-206
0.005
0
LINC00593
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558385
Biotype: lincRNA
Gene id: ENSG00000259703
Gene Name: LINC00593
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
631-648
0.028
0
RP11-923I11.6
hsa-miR-149-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562343
Biotype: lincRNA
Gene id: ENSG00000261586
Gene Name: RP11-923I11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-219
0.010
1
7mer
1426-1451
0.005
0
7mer
723-738
0.004
1
6mer
229-254
0.003
1
7mer
1294-1315
0.003
1
6mer
392-411
0.002
0
6mer
507-533
0.001
2
6mer
405-421
0.001
1
6mer
1020-1038
0.001
1
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