LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-457M11.7
hsa-miR-149-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000611708
Biotype: lincRNA
Gene id: ENSG00000275846
Gene Name: RP11-457M11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2768-2782
0.027
1
6mer
927-952
0.002
1
LINC00635
hsa-miR-149-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000611829
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
223-243
0.026
1
6mer
238-263
0.003
1
FAM138F
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586011
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1126-1145
0.019
0
6mer
796-818
0.004
0
6mer
809-826
0.003
0
6mer
171-189
0.003
Not Conserved
RP11-775C24.3
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563737
Biotype: lincRNA
Gene id: ENSG00000260619
Gene Name: RP11-775C24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
924-939
0.018
7
7mer
518-534
0.009
2
6mer
398-416
0.002
1
CTD-2020K17.1
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591365
Biotype: antisense
Gene id: ENSG00000267121
Gene Name: CTD-2020K17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-615
0.017
4
7mer
508-528
0.009
3
6mer
1320-1346
0.002
1
6mer
1547-1567
0.001
0
RP11-253E3.3
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513358
Biotype: lincRNA
Gene id: ENSG00000250899
Gene Name: RP11-253E3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
250-265
0.007
1
9mer
219-237
0.006
1
8mer+wobble
1150-1175
0.003
0
7mer
210-233
0.003
1
7mer
235-253
0.003
0
7mer
247-261
0.003
0
6mer
2965-2980
0.002
2
7mer
1166-1180
0.001
1
6mer
1570-1591
0.001
1
FAM138C
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449442
Biotype: lincRNA
Gene id: ENSG00000218839
Gene Name: FAM138C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1026-1045
0.017
0
6mer
696-718
0.005
1
6mer
173-191
0.004
0
6mer
709-726
0.004
1
LINC00662
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027301.1
Biotype: lincRNA
Gene id: NR_027301.1 (gene)
Gene Name: LINC00662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1298-1320
0.012
0
6mer
1961-1979
0.011
0
6mer
1165-1179
0.006
0
LINC01330
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494887
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
430-444
0.029
2
LINC00662
hsa-miR-149-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590523
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1300-1322
0.011
0
6mer
1963-1981
0.011
0
6mer
1167-1181
0.006
0
RP1-92O14.3
hsa-miR-149-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424948
Biotype: antisense
Gene id: ENSG00000234694
Gene Name: RP1-92O14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
150-168
0.029
1
XLOC_000116
hsa-miR-149-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001970
Biotype: transcript isomorph
Gene id: XLOC_000116
Gene Name: XLOC_000116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-386
0.024
1
7mer
162-181
0.005
1
XLOC_012227
hsa-miR-149-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025175
Biotype: transcript isomorph
Gene id: XLOC_012227
Gene Name: XLOC_012227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1283-1299
0.017
1
6mer
39-57
0.004
2
6mer
986-998
0.003
1
6mer
666-682
0.002
1
6mer
192-215
0.002
1
TINCR
hsa-miR-149-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448587
Biotype: lincRNA
Gene id: ENSG00000223573
Gene Name: TINCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
746-771
0.017
0
6mer
778-797
0.002
1
7mer
696-719
0.002
1
6mer
111-132
0.002
1
7mer
2058-2079
0.002
0
6mer
3257-3273
0.002
1
6mer
2594-2608
0.002
1
RP11-340I6.7
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593670
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-681
0.027
0
6mer
712-733
0.002
0
AP006285.7
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000415865
Biotype: lincRNA
Gene id: ENSG00000231487
Gene Name: AP006285.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-289
0.024
1
6mer
383-403
0.005
0
RP11-579D7.2
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548742
Biotype: antisense
Gene id: ENSG00000257653
Gene Name: RP11-579D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-232
0.014
5
6mer
107-123
0.012
9
6mer
59-76
0.002
1
TINCR
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027064.1
Biotype: lincRNA
Gene id: NR_027064.1 (gene)
Gene Name: TINCR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
746-771
0.017
0
6mer
778-797
0.003
1
7mer
696-719
0.002
1
6mer
111-132
0.002
1
7mer
2058-2079
0.002
0
6mer
3257-3273
0.002
1
6mer
2594-2608
0.002
1
MIR4453
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000604157
Biotype: lincRNA
Gene id: ENSG00000268471
Gene Name: MIR4453
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2499-2516
0.020
2
8mer
2456-2480
0.005
Not Conserved
7mer
555-570
0.003
0
LINC01002
hsa-miR-149-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587051
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1350-1365
0.003
1
6mer
474-494
0.003
1
6mer
1223-1239
0.003
1
6mer
1541-1558
0.002
0
7mer
49-75
0.002
Not Conserved
8mer+mismatch
412-438
0.002
0
7mer
146-172
0.002
Not Conserved
7mer
244-270
0.002
Not Conserved
7mer
195-221
0.002
Not Conserved
6mer
645-667
0.002
0
7mer
98-123
0.001
Not Conserved
6mer
405-425
0.001
0
7mer
375-401
0.001
0
6mer
702-721
0.001
0
6mer
293-318
0.001
Not Conserved
6mer
430-453
0.000
Not Conserved
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