LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-227G15.12
hsa-miR-149-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000625127
Biotype: antisense
Gene id: ENSG00000279762
Gene Name: RP11-227G15.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2474-2494
0.006
2
7mer
1912-1930
0.005
2
6mer
91-113
0.005
Not Conserved
6mer
1698-1717
0.003
8
6mer
234-256
0.003
Not Conserved
8mer+mismatch
1975-1995
0.002
1
6mer
391-407
0.002
0
6mer
247-267
0.002
Not Conserved
6mer
525-547
0.002
0
6mer
557-572
0.001
0
RP11-356J5.12
hsa-miR-149-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000419895
Biotype: lincRNA
Gene id: ENSG00000250303
Gene Name: RP11-356J5.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1231-1250
0.015
0
9mer
1231-1258
0.013
0
6mer
128-145
0.002
1
ENTPD1-AS1
hsa-miR-149-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416301
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2514-2528
0.014
1
9mer
2692-2708
0.003
1
6mer
550-566
0.002
1
6mer
863-888
0.002
0
6mer
2720-2732
0.002
1
6mer
717-735
0.001
0
6mer
685-696
0.001
1
6mer
1029-1047
0.001
1
6mer
2643-2664
0.001
2
6mer
2117-2140
0.001
3
6mer
2696-2717
0.000
1
RP11-298I3.4
hsa-miR-149-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557615
Biotype: antisense
Gene id: ENSG00000258457
Gene Name: RP11-298I3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
764-773
0.025
1
6mer
826-841
0.002
2
6mer
413-436
0.002
Not Conserved
LINC00910
hsa-miR-149-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000341011
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
312-337
0.019
1
7mer
691-711
0.006
1
6mer
783-799
0.002
0
6mer
1532-1558
0.001
1
6mer
724-742
0.001
0
LOXL1-AS1
hsa-miR-149-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562965
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
407-427
0.003
0
6mer
270-293
0.002
0
6mer
888-910
0.002
1
6mer
439-457
0.001
0
XLOC_007875
hsa-miR-149-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016496
Biotype: transcript isomorph
Gene id: XLOC_007875
Gene Name: XLOC_007875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-202
0.011
1
7mer
123-142
0.010
0
7mer
88-105
0.004
0
6mer
230-247
0.004
0
FAM95A
hsa-miR-149-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038409.1
Biotype: lincRNA
Gene id: NR_038409.1 (gene)
Gene Name: FAM95A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-724
0.019
Not Conserved
8mer
2103-2123
0.005
Not Conserved
6mer
199-218
0.003
0
6mer
480-495
0.002
0
RP11-56P23.1
hsa-miR-149-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000391366
Biotype: sense_intronic
Gene id: ENSG00000212670
Gene Name: RP11-56P23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1108-1126
0.016
0
6mer
1434-1456
0.004
1
6mer
349-371
0.004
0
6mer
1567-1583
0.003
0
6mer
1406-1424
0.002
0
AC093495.4
hsa-miR-149-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000428681
Biotype: antisense
Gene id: ENSG00000228242
Gene Name: AC093495.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
830-849
0.026
1
7mer
830-846
0.003
1
RP11-521B24.3
hsa-miR-149-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551271
Biotype: antisense
Gene id: ENSG00000251602
Gene Name: RP11-521B24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2116-2139
0.010
0
7mer
1836-1862
0.005
Not Conserved
7mer
2041-2065
0.004
0
6mer
2179-2204
0.003
0
7mer
1972-1995
0.003
0
6mer
922-945
0.002
1
6mer
1025-1036
0.001
0
6mer
2234-2252
0.001
0
RP11-355B11.2
hsa-miR-149-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603652
Biotype: antisense
Gene id: ENSG00000270820
Gene Name: RP11-355B11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-61
0.022
6
6mer
391-407
0.004
1
6mer
68-83
0.003
5
RP11-700H6.2
hsa-miR-149-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000512717
Biotype: lincRNA
Gene id: ENSG00000251665
Gene Name: RP11-700H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-31
0.029
1
LINC00982
hsa-miR-149-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445317
Biotype: antisense
Gene id: ENSG00000177133
Gene Name: LINC00982
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
536-560
0.011
1
8mer
3725-3749
0.004
1
8mer
1101-1118
0.004
1
7mer
1230-1252
0.002
1
7mer
1121-1138
0.002
1
6mer
3293-3316
0.002
1
7mer
1104-1129
0.001
1
6mer
1792-1808
0.001
1
6mer
3281-3302
0.001
0
6mer
840-857
0.001
Not Conserved
6mer
2378-2396
0.001
1
7mer
2363-2382
0.000
0
6mer
2285-2304
0.000
0
6mer
2279-2304
0.000
1
LAMTOR5-AS1
hsa-miR-149-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608253
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-751
0.018
1
6mer
625-647
0.005
1
6mer
324-347
0.004
1
6mer
311-334
0.002
0
UNQ6494
hsa-miR-149-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000617436
Biotype: lincRNA
Gene id: ENSG00000237372
Gene Name: UNQ6494
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-250
0.010
0
7mer
1800-1819
0.006
1
6mer
102-123
0.005
1
6mer
2023-2047
0.004
0
7mer
422-446
0.003
0
6mer
514-536
0.001
1
CTB-25B13.5
hsa-miR-149-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594262
Biotype: lincRNA
Gene id: ENSG00000268798
Gene Name: CTB-25B13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-121
0.025
0
6mer
508-533
0.004
0
RP11-598F7.6
hsa-miR-149-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537961
Biotype: lincRNA
Gene id: ENSG00000256540
Gene Name: RP11-598F7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
971-990
0.010
1
7mer
89-102
0.006
1
7mer
650-670
0.005
0
7mer
557-572
0.004
0
7mer
830-856
0.004
0
6mer
549-562
0.001
0
AC114730.2
hsa-miR-149-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442867
Biotype: antisense
Gene id: ENSG00000235151
Gene Name: AC114730.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-78
0.008
1
7mer
288-307
0.006
1
7mer
55-75
0.004
2
6mer
298-320
0.003
1
6mer
161-184
0.003
1
6mer
173-197
0.003
1
7mer
489-510
0.001
Not Conserved
XLOC_005213
hsa-miR-149-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011165
Biotype: transcript isomorph
Gene id: XLOC_005213
Gene Name: XLOC_005213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2768-2782
0.027
1
6mer
927-952
0.002
1
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