LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002401
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004502
Biotype: transcript isomorph
Gene id: XLOC_002401
Gene Name: XLOC_002401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-487
0.030
6
MGC2889
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_026877.1
Biotype: sense
Gene id: NR_026877.1 (gene)
Gene Name: MGC2889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2061-2083
0.030
2
XLOC_001195
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-401
0.010
0
8mer
6552-6579
0.004
0
7mer
3741-3754
0.002
1
6mer
4727-4745
0.002
1
6mer
10148-10163
0.002
1
6mer
1913-1928
0.002
3
6mer
3511-3537
0.001
2
6mer
9236-9261
0.001
1
6mer
2546-2570
0.001
1
6mer
4561-4576
0.001
1
6mer
9723-9740
0.001
0
6mer
5724-5738
0.001
1
6mer
5737-5756
0.001
Not Conserved
6mer
4695-4717
0.000
0
6mer
6528-6548
0.000
1
XLOC_012002
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024719
Biotype: transcript isomorph
Gene id: XLOC_012002
Gene Name: XLOC_012002
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-30
0.013
5
6mer
328-352
0.009
5
6mer
338-352
0.008
2
XLOC_002585
hsa-miR-149-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-143
0.007
1
8mer+mismatch
5583-5602
0.005
3
6mer
6244-6266
0.005
1
6mer
41-57
0.004
1
7mer
5430-5455
0.003
1
6mer
3307-3323
0.002
1
6mer
5407-5426
0.002
1
6mer
4610-4632
0.002
1
6mer
5031-5057
0.001
0
HOTTIP
hsa-miR-149-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521028
Biotype: antisense
Gene id: ENSG00000243766
Gene Name: HOTTIP
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
645-667
0.019
4
7mer
148-166
0.004
3
7mer
653-673
0.003
2
6mer
55-75
0.002
1
6mer
2116-2140
0.001
3
XLOC_001564
hsa-miR-149-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003762
Biotype: transcript isomorph
Gene id: XLOC_001564
Gene Name: XLOC_001564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
998-1018
0.017
1
6mer
919-936
0.007
1
6mer
181-207
0.005
1
AC026202.3
hsa-miR-149-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439325
Biotype: antisense
Gene id: ENSG00000233912
Gene Name: AC026202.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
339-360
0.029
1
LINC01278
hsa-miR-149-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000608623
Biotype: retained_intron
Gene id: ENSG00000235437
Gene Name: LINC01278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3256-3271
0.011
Not Conserved
7mer
4103-4119
0.004
Not Conserved
8mer
2738-2757
0.004
Not Conserved
7mer
4048-4068
0.002
Not Conserved
6mer
1632-1644
0.002
0
6mer
3057-3081
0.002
Not Conserved
6mer
1287-1311
0.001
0
7mer
2821-2845
0.001
Not Conserved
6mer
1301-1319
0.001
Not Conserved
6mer
4040-4058
0.001
Not Conserved
6mer
2668-2690
0.001
Not Conserved
6mer
2588-2602
0.000
Not Conserved
RP11-359E3.4
hsa-miR-149-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608826
Biotype: antisense
Gene id: ENSG00000272631
Gene Name: RP11-359E3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-760
0.008
1
7mer
386-412
0.006
1
6mer
260-285
0.003
2
6mer
5499-5509
0.003
1
6mer
2894-2917
0.002
1
6mer
3091-3116
0.001
1
7mer
2715-2736
0.001
1
6mer
3318-3335
0.001
1
7mer
2860-2874
0.001
1
6mer
4051-4070
0.001
0
6mer
4490-4516
0.001
1
6mer
4994-5011
0.001
0
6mer
4981-4997
0.000
1
MGC27345
hsa-miR-149-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-344
0.014
0
7mer
6924-6949
0.003
2
7mer
313-325
0.002
0
6mer
4875-4892
0.002
1
7mer
1806-1832
0.002
1
6mer
7757-7773
0.002
1
6mer
1236-1255
0.001
1
6mer
7236-7252
0.001
1
7mer
6894-6915
0.001
0
6mer
4277-4303
0.001
0
6mer
2207-2225
0.001
1
6mer
8129-8151
0.001
0
AC159540.2
hsa-miR-149-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000618807
Biotype: lincRNA
Gene id: ENSG00000278766
Gene Name: AC159540.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-78
0.024
1
6mer
228-246
0.005
1
XLOC_009765
hsa-miR-149-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020437
Biotype: transcript isomorph
Gene id: XLOC_009765
Gene Name: XLOC_009765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1421-1442
0.010
4
7mer
1141-1158
0.010
0
6mer
1785-1805
0.003
3
7mer
1732-1751
0.003
2
6mer
1509-1525
0.003
1
NAMA
hsa-miR-149-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604258
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
743-767
0.016
5
7mer
1943-1964
0.009
1
6mer
523-549
0.003
2
6mer
414-428
0.002
1
AP000997.2
hsa-miR-149-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4934-4952
0.008
4
8mer
7576-7592
0.008
2
8mer+wobble
5031-5050
0.003
2
6mer
858-884
0.003
2
6mer
3902-3929
0.002
4
6mer
1279-1301
0.002
3
6mer
5746-5773
0.002
3
6mer
1913-1939
0.001
0
RP4-639J15.3
hsa-miR-149-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
788-813
0.015
1
6mer
653-675
0.010
1
6mer
87-103
0.004
0
XLOC_007217
hsa-miR-149-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014535
Biotype: transcript isomorph
Gene id: XLOC_007217
Gene Name: XLOC_007217
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-192
0.026
4
6mer
1607-1629
0.002
1
6mer
1432-1454
0.001
1
CASC11
hsa-miR-149-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502463
Biotype: lincRNA
Gene id: ENSG00000249375
Gene Name: CASC11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-194
0.026
4
6mer
1609-1631
0.002
1
6mer
1434-1456
0.001
1
XLOC_001751
hsa-miR-149-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1070-1083
0.029
1
RP11-875O11.3
hsa-miR-149-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520840
Biotype: antisense
Gene id: ENSG00000253616
Gene Name: RP11-875O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-74
0.016
0
6mer
452-478
0.013
1
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