LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-338O1.2
hsa-miR-149-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415509
Biotype: lincRNA
Gene id: ENSG00000225152
Gene Name: RP11-338O1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-166
0.030
1
RP11-121M22.1
hsa-miR-149-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602376
Biotype: lincRNA
Gene id: ENSG00000175773
Gene Name: RP11-121M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-821
0.023
2
7mer
1296-1318
0.005
1
6mer
1187-1205
0.002
1
XLOC_010706
hsa-miR-149-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2180-2204
0.013
0
8mer
1459-1485
0.008
0
6mer
488-510
0.006
0
6mer
2183-2204
0.002
0
6mer
1429-1442
0.002
0
RP11-290F5.2
hsa-miR-149-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000317596
Biotype: lincRNA
Gene id: ENSG00000180712
Gene Name: RP11-290F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
802-826
0.011
0
7mer
409-428
0.007
0
7mer
2052-2078
0.006
1
7mer
806-826
0.005
0
6mer
2071-2092
0.002
0
RP11-388N2.1
hsa-miR-149-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436524
Biotype: lincRNA
Gene id: ENSG00000233516
Gene Name: RP11-388N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
621-634
0.014
0
7mer
593-615
0.011
0
6mer
647-674
0.005
1
LOC100129034
hsa-miR-149-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027406.1
Biotype: antisense
Gene id: NR_027406.1 (gene)
Gene Name: LOC100129034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
541-559
0.014
2
7mer
5564-5573
0.009
1
6mer
4540-4562
0.002
1
6mer
1166-1191
0.001
1
6mer
2692-2717
0.001
0
6mer
1707-1731
0.001
0
6mer
1887-1901
0.001
3
6mer
3521-3538
0.001
0
6mer
2808-2832
0.001
3
6mer
3029-3042
0.000
1
LINC01100
hsa-miR-149-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_104132.1
Biotype: lincRNA
Gene id: NR_104132.1 (gene)
Gene Name: LINC01100
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
32-52
0.030
3
XLOC_014257
hsa-miR-149-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029604
Biotype: transcript isomorph
Gene id: XLOC_014257
Gene Name: XLOC_014257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
80-93
0.014
5
7mer
462-483
0.009
Not Conserved
7mer
1906-1928
0.004
0
6mer
1279-1289
0.002
1
RP11-598F7.4
hsa-miR-149-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508953
Biotype: antisense
Gene id: ENSG00000249695
Gene Name: RP11-598F7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-331
0.011
1
8mer
257-273
0.007
0
7mer
747-770
0.005
1
8mer
3742-3768
0.002
1
6mer
492-513
0.002
2
7mer
260-277
0.002
0
7mer
3210-3224
0.001
0
TMEM147-AS1
hsa-miR-149-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588286
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1063-1080
0.013
1
8mer
3454-3474
0.009
0
8mer+wobble
3669-3694
0.003
1
6mer
482-499
0.003
1
6mer
1550-1570
0.001
2
6mer
2358-2382
0.001
1
6mer
2313-2332
0.000
1
6mer
2273-2298
0.000
2
LINC00599
hsa-miR-149-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517675
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-183
0.013
3
8mer
2633-2652
0.005
1
6mer
238-253
0.004
1
6mer
186-208
0.003
3
6mer
1589-1613
0.002
5
7mer
1953-1972
0.002
3
6mer
3207-3233
0.001
0
XLOC_009955
hsa-miR-149-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020656
Biotype: transcript isomorph
Gene id: XLOC_009955
Gene Name: XLOC_009955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-154
0.016
0
7mer
470-488
0.010
1
7mer
275-295
0.004
Not Conserved
LINC00599
hsa-miR-149-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519461
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-183
0.014
3
8mer
2289-2308
0.005
1
6mer
1245-1269
0.003
5
6mer
186-208
0.003
3
7mer
1609-1628
0.002
3
6mer
2863-2889
0.002
0
LOC100506730
hsa-miR-149-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037847.1
Biotype: lincRNA
Gene id: NR_037847.1 (gene)
Gene Name: LOC100506730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2108-2133
0.013
0
9mer
1254-1275
0.006
0
6mer
367-389
0.004
0
7mer
922-937
0.004
0
7mer
1258-1281
0.002
0
XLOC_003463
hsa-miR-149-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007999
Biotype: transcript isomorph
Gene id: XLOC_003463
Gene Name: XLOC_003463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1196-1220
0.017
2
6mer
119-144
0.005
3
6mer
1196-1217
0.004
3
6mer
106-119
0.003
0
RP11-459E5.1
hsa-miR-149-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519624
Biotype: retained_intron
Gene id: ENSG00000253125
Gene Name: RP11-459E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-173
0.030
0
RP4-530I15.6
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000452336
Biotype: antisense
Gene id: ENSG00000234693
Gene Name: RP4-530I15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
344-364
0.030
2
RP11-313A24.1
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451611
Biotype: antisense
Gene id: ENSG00000230427
Gene Name: RP11-313A24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
881-899
0.030
0
CECR3
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428828
Biotype: lincRNA
Gene id: ENSG00000241832
Gene Name: CECR3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1293-1312
0.008
4
8mer
1290-1305
0.007
2
7mer
573-590
0.007
1
7mer
975-998
0.006
0
6mer
617-642
0.001
2
AC011343.1
hsa-miR-149-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2573-2596
0.023
1
6mer
4877-4899
0.003
3
7mer
756-781
0.003
2
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