LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LINC00504
hsa-miR-149-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505089
Biotype: lincRNA
Gene id: ENSG00000248360
Gene Name: LINC00504
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
393-415
0.011
2
7mer
3248-3270
0.007
0
6mer
225-241
0.006
1
6mer
4377-4393
0.004
0
6mer
4637-4652
0.003
1
MIR4435-1HG
hsa-miR-149-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603827
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1239-1262
0.025
3
7mer
1242-1267
0.005
2
AC091633.3
hsa-miR-149-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417011
Biotype: antisense
Gene id: ENSG00000223711
Gene Name: AC091633.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-81
0.030
2
LINC00665
hsa-miR-149-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585356
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
447-464
0.012
1
6mer
605-620
0.011
1
6mer
920-946
0.008
1
MIR143HG
hsa-miR-149-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602964
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5764-5789
0.011
2
7mer
2644-2663
0.002
3
6mer
7840-7852
0.002
2
6mer
3514-3538
0.002
2
6mer
5550-5577
0.001
1
6mer
6690-6712
0.001
1
6mer
3781-3805
0.001
1
6mer
3239-3260
0.001
1
7mer
3091-3109
0.001
3
7mer
2307-2330
0.001
Not Conserved
6mer
6562-6578
0.001
1
7mer
4237-4261
0.001
1
6mer
4955-4970
0.001
3
8mer
4240-4264
0.001
1
6mer
3816-3834
0.001
1
6mer
6392-6410
0.001
1
6mer
4918-4932
0.001
1
6mer
2471-2489
0.000
1
6mer
6423-6443
0.000
1
6mer
2383-2400
0.000
3
HAND2-AS1
hsa-miR-149-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508887
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
952-966
0.028
1
6mer
952-963
0.002
1
F10-AS1
hsa-miR-149-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000424635
Biotype: antisense
Gene id: ENSG00000231882
Gene Name: F10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
291-306
0.016
0
6mer
344-369
0.015
0
RP11-284F21.10
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000605886
Biotype: antisense
Gene id: ENSG00000272405
Gene Name: RP11-284F21.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2683-2708
0.009
1
8mer
2687-2712
0.007
5
6mer
3007-3025
0.004
4
6mer
2377-2393
0.003
1
7mer
2999-3018
0.002
1
6mer
663-685
0.002
2
7mer
438-452
0.001
1
6mer
2045-2067
0.001
Not Conserved
7mer
388-405
0.001
1
6mer
656-670
0.001
0
MAGI2-AS3
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8358-8376
0.017
1
7mer
5103-5119
0.008
0
7mer
7409-7435
0.002
0
6mer
4365-4381
0.001
0
6mer
7566-7581
0.001
0
6mer
7422-7444
0.001
0
AP000688.29
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
107-133
0.011
0
6mer
1911-1933
0.010
0
6mer
645-659
0.009
0
AC113189.5
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000415124
Biotype: antisense
Gene id: ENSG00000233223
Gene Name: AC113189.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-40
0.029
1
6mer
183-202
0.002
1
NAMA
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-422
0.022
5
7mer
1461-1482
0.008
1
RP11-91I8.3
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577327
Biotype: antisense
Gene id: ENSG00000266441
Gene Name: RP11-91I8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-90
0.023
2
6mer
7-25
0.007
3
CTC-457L16.2
hsa-miR-149-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573168
Biotype: antisense
Gene id: ENSG00000262319
Gene Name: CTC-457L16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-180
0.010
0
7mer
332-357
0.007
0
7mer
1240-1266
0.003
1
7mer
164-180
0.002
0
6mer
2346-2373
0.002
0
7mer
887-903
0.002
0
6mer
1419-1440
0.002
Not Conserved
6mer
1985-2011
0.001
0
6mer
2066-2083
0.001
0
RP11-370I10.12
hsa-miR-149-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000595310
Biotype: lincRNA
Gene id: ENSG00000269514
Gene Name: RP11-370I10.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3121-3139
0.011
Not Conserved
9mer
3107-3123
0.005
Not Conserved
6mer
3380-3402
0.004
0
6mer
3345-3361
0.003
0
6mer
3253-3273
0.002
0
6mer
3240-3254
0.002
Not Conserved
6mer
801-821
0.001
0
6mer
1409-1422
0.001
1
6mer
2264-2286
0.001
Not Conserved
XLOC_012312
hsa-miR-149-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025497
Biotype: transcript isomorph
Gene id: XLOC_012312
Gene Name: XLOC_012312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-510
0.030
0
LINC00656
hsa-miR-149-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443744
Biotype: lincRNA
Gene id: ENSG00000233746
Gene Name: LINC00656
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1334-1360
0.012
1
7mer
1732-1758
0.008
2
8mer+wobble
1331-1347
0.006
1
6mer
1718-1738
0.003
2
RP11-143N13.2
hsa-miR-149-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562852
Biotype: lincRNA
Gene id: ENSG00000260201
Gene Name: RP11-143N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
772-792
0.030
2
RP4-530I15.6
hsa-miR-149-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000435177
Biotype: antisense
Gene id: ENSG00000234693
Gene Name: RP4-530I15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
203-223
0.030
2
XLOC_009432
hsa-miR-149-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019631
Biotype: transcript isomorph
Gene id: XLOC_009432
Gene Name: XLOC_009432
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1540-1564
0.025
1
6mer
478-498
0.003
3
6mer
944-964
0.002
3
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