LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-77H9.2
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565934
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-77
0.020
4
8mer
1331-1349
0.003
1
6mer
1760-1775
0.002
0
7mer
1876-1897
0.002
Not Conserved
6mer
1726-1743
0.001
1
6mer
978-996
0.001
1
6mer
1032-1051
0.001
2
6mer
1380-1393
0.001
1
LINC01168
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000461291
Biotype: lincRNA
Gene id: ENSG00000240707
Gene Name: LINC01168
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
679-698
0.009
1
7mer
1345-1362
0.003
1
7mer
681-694
0.003
1
6mer
556-581
0.002
0
8mer
1739-1764
0.002
1
6mer
4551-4570
0.002
0
6mer
375-392
0.002
0
6mer
4777-4801
0.002
0
8mer+wobble
3152-3171
0.001
1
8mer
2134-2152
0.001
1
6mer
2316-2341
0.001
1
8mer
1816-1842
0.001
1
7mer
2050-2076
0.001
0
6mer
1756-1773
0.000
1
6mer
1816-1832
0.000
1
LINC00877
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468646
Biotype: lincRNA
Gene id: ENSG00000241163
Gene Name: LINC00877
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1164-1188
0.017
2
7mer
818-839
0.010
1
6mer
37-47
0.003
1
6mer
1825-1847
0.002
1
CSMD2-AS1
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438719
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-214
0.031
1
XLOC_002241
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003356
Biotype: transcript isomorph
Gene id: XLOC_002241
Gene Name: XLOC_002241
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1132-1148
0.019
2
7mer
1124-1143
0.003
2
6mer
375-394
0.002
0
7mer
842-853
0.002
4
6mer
617-642
0.002
1
7mer
1117-1143
0.002
1
RP11-354M20.3
hsa-miR-149-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595446
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
599-625
0.031
4
RP11-55L4.1
hsa-miR-149-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572923
Biotype: antisense
Gene id: ENSG00000262296
Gene Name: RP11-55L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-172
0.018
2
7mer
156-175
0.013
4
RP11-195F19.30
hsa-miR-149-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000564224
Biotype: retained_intron
Gene id: ENSG00000261215
Gene Name: RP11-195F19.30
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2820-2835
0.013
5
9mer
2412-2428
0.007
1
7mer
1302-1317
0.003
2
7mer
2860-2881
0.003
1
6mer
2671-2686
0.002
1
6mer
2416-2441
0.002
1
GS1-421I3.5
hsa-miR-149-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000616771
Biotype: lincRNA
Gene id: ENSG00000277663
Gene Name: GS1-421I3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-469
0.031
0
LINC01226
hsa-miR-149-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417514
Biotype: lincRNA
Gene id: ENSG00000223907
Gene Name: LINC01226
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
681-704
0.016
0
7mer
616-633
0.009
1
6mer
1008-1024
0.006
1
RP11-231I13.2
hsa-miR-149-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567252
Biotype: antisense
Gene id: ENSG00000242120
Gene Name: RP11-231I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-379
0.013
6
7mer
278-300
0.012
5
7mer
617-639
0.006
1
XLOC_004366
hsa-miR-149-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13981-14006
0.011
0
6mer
14165-14185
0.005
0
6mer
5868-5890
0.002
0
6mer
3850-3870
0.002
1
7mer
7198-7213
0.002
0
6mer
3987-4004
0.002
1
6mer
6921-6934
0.002
0
7mer
2272-2297
0.002
Not Conserved
7mer
4265-4284
0.001
Not Conserved
6mer
4531-4553
0.001
0
6mer
4410-4432
0.001
0
6mer
4385-4400
0.000
0
6mer
4541-4566
0.000
0
MEG3
hsa-miR-149-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398461
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1637-1659
0.006
1
7mer
904-920
0.005
0
6mer
532-548
0.005
1
6mer
3175-3199
0.003
3
6mer
671-687
0.003
1
6mer
2577-2600
0.002
1
6mer
2305-2331
0.001
4
6mer
1525-1546
0.001
1
6mer
1178-1195
0.001
1
6mer
1619-1644
0.001
1
6mer
2651-2671
0.001
1
6mer
2423-2438
0.001
0
6mer
2186-2201
0.001
1
RP4-794I6.4
hsa-miR-149-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000621919
Biotype: lincRNA
Gene id: ENSG00000277287
Gene Name: RP4-794I6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1552-1574
0.008
1
6mer
419-443
0.003
1
7mer
2737-2761
0.003
0
7mer
714-731
0.002
Not Conserved
6mer
5475-5491
0.002
0
7mer
2433-2451
0.001
Not Conserved
6mer
3706-3728
0.001
2
6mer
4294-4317
0.001
1
6mer
4459-4478
0.001
0
6mer
4469-4491
0.001
2
6mer
616-634
0.001
Not Conserved
6mer
3337-3362
0.001
1
6mer
3573-3588
0.001
1
6mer
3002-3019
0.001
1
6mer
3177-3193
0.001
1
6mer
1404-1423
0.001
0
6mer
1644-1663
0.001
1
6mer
3862-3876
0.001
0
6mer
3893-3908
0.001
1
XLOC_006712
hsa-miR-149-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014617
Biotype: transcript isomorph
Gene id: XLOC_006712
Gene Name: XLOC_006712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2095-2108
0.017
1
8mer
2085-2105
0.008
1
6mer
1057-1077
0.003
1
7mer
32-48
0.003
0
LINC00265
hsa-miR-149-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340510
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
59-80
0.008
1
8mer+wobble
2479-2499
0.003
0
6mer
2609-2625
0.003
0
6mer
2971-2987
0.002
0
6mer
2858-2880
0.002
0
6mer
1080-1102
0.002
1
6mer
2354-2378
0.001
1
6mer
952-972
0.001
1
6mer
1887-1902
0.001
1
6mer
2804-2823
0.001
0
6mer
2169-2188
0.001
0
6mer
2075-2101
0.001
0
6mer
2283-2300
0.001
0
6mer
1519-1538
0.001
1
6mer
1439-1459
0.001
0
6mer
1694-1711
0.001
0
6mer
1529-1551
0.001
1
6mer
2044-2059
0.000
Not Conserved
LINC00323
hsa-miR-149-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441268
Biotype: antisense
Gene id: ENSG00000226496
Gene Name: LINC00323
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1957-1984
0.024
1
6mer
1806-1826
0.004
1
6mer
1942-1962
0.003
1
LOC100131825
hsa-miR-149-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037870.1
Biotype: antisense
Gene id: NR_037870.1 (gene)
Gene Name: LOC100131825
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2601-2622
0.014
2
7mer
2624-2640
0.005
1
7mer
2981-2994
0.004
0
6mer
345-359
0.004
1
6mer
3107-3124
0.002
1
7mer
2619-2640
0.002
4
6mer
2141-2160
0.001
1
7mer
2604-2622
0.001
2
RP11-23P13.6
hsa-miR-149-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000309874
Biotype: antisense
Gene id: ENSG00000174171
Gene Name: RP11-23P13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2280-2305
0.008
Not Conserved
6mer
163-189
0.006
9
7mer
1217-1239
0.005
4
6mer
730-749
0.003
0
6mer
2444-2464
0.002
1
7mer
1363-1381
0.002
1
6mer
302-322
0.002
1
6mer
1269-1288
0.001
8
6mer
1715-1741
0.001
0
6mer
2312-2336
0.001
1
XLOC_008768
hsa-miR-149-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018466
Biotype: transcript isomorph
Gene id: XLOC_008768
Gene Name: XLOC_008768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-370
0.017
1
7mer
503-526
0.013
2
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