LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012587
hsa-miR-149-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025781
Biotype: transcript isomorph
Gene id: XLOC_012587
Gene Name: XLOC_012587
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
173-189
0.008
1
7mer
3301-3325
0.005
1
8mer
206-226
0.004
1
8mer
912-936
0.002
1
6mer
20-43
0.002
0
6mer
3912-3933
0.001
1
7mer
2103-2121
0.001
0
6mer
2619-2643
0.001
1
7mer
3907-3933
0.001
1
6mer
3584-3604
0.001
2
6mer
350-370
0.001
1
7mer
1546-1562
0.001
0
6mer
1858-1871
0.001
1
6mer
768-791
0.001
0
6mer
3546-3564
0.000
2
RP11-16N11.2
hsa-miR-149-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566372
Biotype: antisense
Gene id: ENSG00000260572
Gene Name: RP11-16N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1592-1607
0.027
1
6mer
139-156
0.003
1
6mer
1595-1616
0.002
1
RP11-347H15.4
hsa-miR-149-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529219
Biotype: lincRNA
Gene id: ENSG00000254518
Gene Name: RP11-347H15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
470-488
0.015
1
6mer
369-385
0.006
0
6mer
16-40
0.006
1
6mer
338-353
0.004
0
HCG18
hsa-miR-149-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412685
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
828-846
0.010
1
7mer
917-939
0.008
1
6mer
502-517
0.003
2
6mer
1948-1971
0.003
1
6mer
1432-1450
0.002
1
6mer
1819-1840
0.002
1
6mer
831-850
0.001
1
6mer
2237-2255
0.001
0
RP11-542A14.2
hsa-miR-149-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607514
Biotype: lincRNA
Gene id: ENSG00000272085
Gene Name: RP11-542A14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-157
0.031
8
RP11-219E7.1
hsa-miR-149-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556624
Biotype: antisense
Gene id: ENSG00000258810
Gene Name: RP11-219E7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-99
0.031
1
RP11-384K6.6
hsa-miR-149-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567913
Biotype: lincRNA
Gene id: ENSG00000260404
Gene Name: RP11-384K6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3453-3472
0.006
Not Conserved
6mer
69-89
0.005
1
6mer
4347-4366
0.003
0
6mer
940-956
0.002
1
7mer
3986-4013
0.002
Not Conserved
6mer
1292-1307
0.002
1
6mer
837-864
0.002
0
6mer
4032-4048
0.002
0
7mer
3772-3791
0.001
Not Conserved
6mer
4222-4237
0.001
Not Conserved
6mer
2597-2622
0.001
Not Conserved
6mer
2123-2143
0.001
0
7mer
2214-2240
0.001
0
6mer
1418-1434
0.001
0
6mer
2784-2810
0.000
Not Conserved
6mer
2838-2860
0.000
Not Conserved
6mer
2867-2885
0.000
Not Conserved
6mer
2727-2750
0.000
Not Conserved
RP11-284M14.1
hsa-miR-149-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507826
Biotype: antisense
Gene id: ENSG00000250326
Gene Name: RP11-284M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-508
0.015
Not Conserved
9mer
513-527
0.009
1
6mer
478-504
0.003
0
6mer
533-559
0.003
1
7mer
497-508
0.001
Not Conserved
RP3-416J7.5
hsa-miR-149-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000381078
Biotype: lincRNA
Gene id: ENSG00000205653
Gene Name: RP3-416J7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1625-1645
0.007
Not Conserved
8mer+wobble
492-514
0.006
1
7mer
1379-1391
0.004
1
7mer
1644-1663
0.004
1
6mer
409-430
0.003
0
6mer
1331-1350
0.002
1
6mer
1363-1386
0.002
1
6mer
1569-1594
0.002
0
RP11-138I18.2
hsa-miR-149-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000604086
Biotype: lincRNA
Gene id: ENSG00000271046
Gene Name: RP11-138I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-259
0.028
1
6mer
134-150
0.003
1
HCG14
hsa-miR-149-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444986
Biotype: antisense
Gene id: ENSG00000224157
Gene Name: HCG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-291
0.027
0
6mer
149-175
0.004
1
RP11-182L21.6
hsa-miR-149-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000605920
Biotype: lincRNA
Gene id: ENSG00000272447
Gene Name: RP11-182L21.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1538-1565
0.015
0
6mer
1071-1088
0.011
0
6mer
48-74
0.002
Not Conserved
7mer
113-135
0.001
Not Conserved
8mer+mismatch
836-858
0.001
Not Conserved
7mer
39-60
0.001
Not Conserved
XLOC_014411
hsa-miR-149-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029736
Biotype: transcript isomorph
Gene id: XLOC_014411
Gene Name: XLOC_014411
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
200-219
0.006
1
7mer
1030-1053
0.006
0
6mer
187-209
0.006
1
8mer
2296-2312
0.005
Not Conserved
6mer
355-380
0.004
1
6mer
1462-1485
0.002
0
7mer
2299-2316
0.002
Not Conserved
XLOC_010776
hsa-miR-149-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022935
Biotype: transcript isomorph
Gene id: XLOC_010776
Gene Name: XLOC_010776
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-561
0.031
3
RP11-95M5.1
hsa-miR-149-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566553
Biotype: lincRNA
Gene id: ENSG00000260902
Gene Name: RP11-95M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3606-3630
0.016
2
7mer
1662-1674
0.007
0
7mer
1919-1939
0.003
2
6mer
3310-3322
0.002
1
6mer
3483-3502
0.002
1
6mer
1900-1926
0.000
1
ZNF337-AS1
hsa-miR-149-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414393
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4380-4402
0.011
0
7mer
1391-1411
0.005
1
6mer
414-424
0.003
1
6mer
168-186
0.003
0
6mer
275-293
0.002
1
6mer
4212-4236
0.002
0
6mer
984-999
0.002
1
6mer
1633-1650
0.001
1
6mer
4199-4217
0.001
1
6mer
3231-3248
0.001
1
RP11-414J4.2
hsa-miR-149-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564823
Biotype: retained_intron
Gene id: ENSG00000261606
Gene Name: RP11-414J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2769-2784
0.010
3
7mer
504-525
0.008
3
9mer
2877-2898
0.004
3
7mer
4105-4127
0.004
0
7mer
513-530
0.002
1
6mer
4296-4320
0.001
1
6mer
4134-4154
0.001
2
6mer
2877-2894
0.001
3
XLOC_011292
hsa-miR-149-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023265
Biotype: transcript isomorph
Gene id: XLOC_011292
Gene Name: XLOC_011292
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1637
0.012
1
7mer
337-354
0.011
1
6mer
1234-1251
0.003
1
6mer
391-408
0.002
1
6mer
1369-1384
0.002
1
RP11-434I12.3
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518355
Biotype: lincRNA
Gene id: ENSG00000253339
Gene Name: RP11-434I12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-207
0.017
3
7mer
485-507
0.014
2
AC005550.3
hsa-miR-149-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451240
Biotype: antisense
Gene id: ENSG00000237070
Gene Name: AC005550.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1043-1070
0.026
2
6mer
3266-3283
0.004
0
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