LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-149-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
EGFR-AS1
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442411
Biotype: antisense
Gene id: ENSG00000224057
Gene Name: EGFR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-226
0.008
1
9mer
2594-2610
0.008
1
7mer
1753-1771
0.004
1
6mer
131-144
0.004
1
7mer
1011-1033
0.003
1
6mer
775-793
0.002
0
6mer
2598-2624
0.002
1
6mer
1742-1755
0.000
Not Conserved
CTC-209H22.3
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521251
Biotype: antisense
Gene id: ENSG00000253172
Gene Name: CTC-209H22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-331
0.032
2
DLX6-AS1
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14838-14855
0.008
1
7mer
3857-3871
0.007
1
9mer
11504-11516
0.006
1
6mer
14990-15006
0.003
1
7mer
5456-5475
0.002
0
6mer
3726-3745
0.001
1
6mer
2916-2938
0.001
1
6mer
3315-3333
0.001
1
6mer
12209-12227
0.001
2
6mer
5295-5311
0.001
1
LINC00263
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454935
Biotype: lincRNA
Gene id: ENSG00000235823
Gene Name: LINC00263
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1331-1346
0.013
0
8mer
183-199
0.012
4
6mer
690-708
0.002
1
6mer
1085-1103
0.002
1
6mer
1546-1566
0.001
0
6mer
1455-1471
0.001
0
RP11-116D17.4
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617627
Biotype: lincRNA
Gene id: ENSG00000276308
Gene Name: RP11-116D17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-614
0.028
0
7mer
1181-1199
0.004
0
RP4-669L17.10
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4122-4142
0.005
Not Conserved
6mer
4000-4024
0.004
1
6mer
414-429
0.004
1
6mer
540-556
0.002
0
6mer
3785-3804
0.002
0
6mer
221-238
0.002
Not Conserved
6mer
3626-3642
0.002
1
8mer
2456-2477
0.001
Not Conserved
6mer
3562-3579
0.001
0
7mer
3701-3718
0.001
Not Conserved
6mer
3286-3307
0.001
Not Conserved
6mer
1245-1265
0.001
Not Conserved
6mer
1600-1619
0.001
Not Conserved
6mer
2238-2257
0.001
0
7mer
2737-2763
0.001
0
6mer
1789-1811
0.001
0
7mer
2883-2908
0.001
0
6mer
2292-2314
0.001
0
7mer
2793-2811
0.001
0
7mer
1337-1363
0.000
Not Conserved
6mer
2641-2666
0.000
0
6mer
2465-2485
0.000
0
6mer
1715-1732
0.000
Not Conserved
6mer
2534-2554
0.000
0
7mer
2834-2860
0.000
Not Conserved
7mer
2689-2714
0.000
Not Conserved
6mer
2506-2529
0.000
0
6mer
1635-1656
0.000
Not Conserved
8mer+mismatch
2521-2547
0.000
Not Conserved
7mer
2558-2584
0.000
Not Conserved
XLOC_008270
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017565
Biotype: transcript isomorph
Gene id: XLOC_008270
Gene Name: XLOC_008270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-143
0.024
Not Conserved
7mer
507-529
0.007
Not Conserved
XLOC_012099
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025294
Biotype: transcript isomorph
Gene id: XLOC_012099
Gene Name: XLOC_012099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-52
0.031
1
XLOC_014122
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029182
Biotype: transcript isomorph
Gene id: XLOC_014122
Gene Name: XLOC_014122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-47
0.028
1
6mer
377-402
0.004
1
GLG1
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566788
Biotype: lincRNA
Gene id: ENSG00000260539
Gene Name: GLG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-850
0.022
1
6mer
1921-1942
0.004
3
6mer
519-536
0.003
2
6mer
1220-1242
0.002
1
6mer
1600-1626
0.001
1
XLOC_009884
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020565
Biotype: transcript isomorph
Gene id: XLOC_009884
Gene Name: XLOC_009884
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-204
0.019
1
8mer
452-475
0.010
2
6mer
186-201
0.003
1
RP11-674P19.2
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1221
0.022
1
7mer
398-412
0.009
0
RP11-449J10.1
hsa-miR-149-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564358
Biotype: antisense
Gene id: ENSG00000260701
Gene Name: RP11-449J10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-493
0.021
1
7mer
469-490
0.010
1
MALAT1
hsa-miR-149-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000610851
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-278
0.031
6
LINC00523
hsa-miR-149-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556697
Biotype: lincRNA
Gene id: ENSG00000196273
Gene Name: LINC00523
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
532-549
0.009
1
6mer
2027-2046
0.007
1
8mer
1733-1759
0.004
0
6mer
1962-1986
0.003
0
6mer
1904-1922
0.002
0
6mer
1789-1804
0.002
0
6mer
1694-1713
0.002
0
6mer
310-329
0.002
1
RP5-1120P11.3
hsa-miR-149-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455005
Biotype: lincRNA
Gene id: ENSG00000231881
Gene Name: RP5-1120P11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-462
0.015
5
8mer+wobble
492-515
0.009
1
6mer
1344-1361
0.004
2
6mer
361-374
0.002
1
KRT73-AS1
hsa-miR-149-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552364
Biotype: antisense
Gene id: ENSG00000257495
Gene Name: KRT73-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3501-3519
0.010
3
8mer
1302-1317
0.010
2
6mer
327-349
0.004
1
6mer
460-485
0.003
1
6mer
986-1012
0.002
0
6mer
1830-1856
0.001
1
7mer
1002-1024
0.001
1
7mer
668-687
0.001
Not Conserved
HCG18
hsa-miR-149-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3280-3297
0.009
0
8mer
1197-1215
0.006
1
7mer
1286-1308
0.006
1
6mer
3672-3690
0.003
1
6mer
4059-4079
0.003
1
6mer
871-886
0.003
2
6mer
1200-1219
0.001
1
XLOC_007907
hsa-miR-149-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016916
Biotype: transcript isomorph
Gene id: XLOC_007907
Gene Name: XLOC_007907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-143
0.024
Not Conserved
7mer
507-529
0.007
Not Conserved
CTD-3074O7.5
hsa-miR-149-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527274
Biotype: antisense
Gene id: ENSG00000255517
Gene Name: CTD-3074O7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-532
0.013
3
7mer
49-74
0.012
3
7mer
815-830
0.005
1
7mer
446-466
0.001
2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept