LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-379B18.5
hsa-miR-149-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614540
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.030
4
6mer
315-337
0.002
Not Conserved
ASH1L-AS1
hsa-miR-149-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456633
Biotype: antisense
Gene id: ENSG00000235919
Gene Name: ASH1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-221
0.023
4
8mer+wobble
689-712
0.004
1
7mer
320-342
0.003
2
7mer
355-377
0.001
0
CTD-2547L24.3
hsa-miR-149-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554096
Biotype: antisense
Gene id: ENSG00000258875
Gene Name: CTD-2547L24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-466
0.027
0
6mer
1142-1159
0.003
0
6mer
1001-1026
0.001
0
6mer
980-994
0.001
0
CTD-2622I13.3
hsa-miR-149-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600056
Biotype: sense_intronic
Gene id: ENSG00000268670
Gene Name: CTD-2622I13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-57
0.025
7
7mer
421-435
0.004
1
6mer
645-665
0.003
1
FZD10-AS1
hsa-miR-149-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000509760
Biotype: lincRNA
Gene id: ENSG00000250208
Gene Name: FZD10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
587-612
0.016
0
9mer
2187-2207
0.004
0
8mer+wobble
3225-3250
0.002
0
6mer
1670-1692
0.002
1
6mer
2796-2814
0.002
0
6mer
2435-2456
0.001
0
8mer
1939-1962
0.001
Not Conserved
6mer
2191-2217
0.001
1
6mer
3088-3103
0.001
1
6mer
3013-3031
0.001
1
6mer
2414-2439
0.001
0
6mer
1930-1948
0.001
1
ZNRD1-AS1
hsa-miR-149-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8810-8833
0.005
1
7mer
1944-1959
0.004
1
7mer
4425-4449
0.004
0
7mer
6646-6672
0.003
1
7mer
1108-1130
0.003
0
6mer
1057-1079
0.003
1
6mer
5946-5972
0.002
1
6mer
4733-4750
0.002
0
6mer
5229-5256
0.002
1
6mer
4155-4169
0.002
0
6mer
3376-3392
0.002
0
ZNF503-AS1
hsa-miR-149-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416398
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-363
0.014
1
7mer
621-644
0.012
3
6mer
485-498
0.003
1
7mer
342-360
0.002
0
RP11-384P7.7
hsa-miR-149-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2127-2146
0.028
2
6mer
2677-2698
0.004
1
XLOC_007554
hsa-miR-149-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015746
Biotype: transcript isomorph
Gene id: XLOC_007554
Gene Name: XLOC_007554
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-462
0.017
0
8mer
440-459
0.015
0
XLOC_000118
hsa-miR-149-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000879
Biotype: transcript isomorph
Gene id: XLOC_000118
Gene Name: XLOC_000118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2151-2167
0.006
0
7mer
2852-2871
0.005
0
8mer
1679-1704
0.005
0
6mer
49-71
0.005
1
6mer
2872-2897
0.004
0
7mer
1055-1071
0.002
0
6mer
1339-1360
0.002
0
6mer
953-967
0.001
1
6mer
914-927
0.001
1
6mer
2172-2190
0.001
0
LINC01359
hsa-miR-149-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
972-994
0.011
0
6mer
324-341
0.004
1
6mer
2575-2595
0.003
0
6mer
491-505
0.003
1
6mer
472-492
0.002
1
6mer
714-731
0.002
0
6mer
1931-1949
0.002
1
6mer
2441-2457
0.002
0
6mer
2098-2112
0.002
1
XLOC_013552
hsa-miR-149-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028202
Biotype: transcript isomorph
Gene id: XLOC_013552
Gene Name: XLOC_013552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6727-6752
0.005
3
6mer
5628-5648
0.002
1
6mer
164-183
0.002
1
7mer
222-242
0.002
1
6mer
378-397
0.001
0
7mer
3546-3572
0.001
0
7mer
6733-6757
0.001
0
6mer
2718-2737
0.001
Not Conserved
6mer
5206-5225
0.001
1
6mer
1010-1029
0.001
0
6mer
488-503
0.001
0
7mer
4334-4351
0.001
0
6mer
1730-1749
0.001
1
6mer
1233-1251
0.001
Not Conserved
7mer
2458-2475
0.001
Not Conserved
6mer
2088-2104
0.001
Not Conserved
6mer
4830-4855
0.001
Not Conserved
6mer
3865-3884
0.001
0
6mer
4437-4456
0.001
0
6mer
745-764
0.001
0
7mer
3246-3266
0.001
Not Conserved
6mer
904-923
0.001
0
7mer
1324-1341
0.001
0
7mer
4649-4669
0.000
Not Conserved
8mer+wobble
3606-3624
0.000
0
6mer
960-976
0.000
0
6mer
2774-2790
0.000
Not Conserved
6mer
3915-3935
0.000
0
6mer
798-817
0.000
0
6mer
1833-1849
0.000
1
6mer
1374-1393
0.000
0
6mer
851-870
0.000
0
6mer
1877-1896
0.000
1
7mer
5259-5276
0.000
1
6mer
4387-4403
0.000
0
6mer
2821-2841
0.000
Not Conserved
CTD-3128G10.7
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614781
Biotype: sense_intronic
Gene id: ENSG00000276980
Gene Name: CTD-3128G10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
926-946
0.006
1
7mer
701-712
0.006
1
8mer+wobble
711-732
0.006
1
7mer
751-772
0.005
1
7mer
645-660
0.004
1
7mer
429-445
0.003
0
7mer
692-711
0.001
0
XLOC_005902
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012819
Biotype: transcript isomorph
Gene id: XLOC_005902
Gene Name: XLOC_005902
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-277
0.017
1
7mer
1761-1776
0.009
1
6mer
382-407
0.003
1
7mer
568-587
0.002
1
AP001057.1
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000437557
Biotype: antisense
Gene id: ENSG00000232124
Gene Name: AP001057.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
755-773
0.012
1
6mer
115-130
0.006
0
6mer
36-53
0.005
0
6mer
526-543
0.005
0
6mer
386-408
0.002
0
6mer
358-376
0.002
Not Conserved
AC009502.4
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607654
Biotype: lincRNA
Gene id: ENSG00000227308
Gene Name: AC009502.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
985-1007
0.010
4
6mer
189-213
0.005
1
6mer
1443-1456
0.004
1
6mer
1573-1589
0.004
1
6mer
1295-1317
0.003
1
7mer
449-468
0.002
0
6mer
630-648
0.002
0
6mer
945-960
0.002
1
PARD6G-AS1
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-740
0.032
1
RP11-599B13.3
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577807
Biotype: lincRNA
Gene id: ENSG00000263427
Gene Name: RP11-599B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-261
0.032
1
FAM95C
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_047651.1
Biotype: sense
Gene id: NR_047651.1 (gene)
Gene Name: FAM95C
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-120
0.011
0
8mer
109-127
0.007
0
8mer
2497-2515
0.005
0
8mer
1516-1531
0.004
0
6mer
2518-2543
0.004
1
XLOC_009037
hsa-miR-149-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019831
Biotype: transcript isomorph
Gene id: XLOC_009037
Gene Name: XLOC_009037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-112
0.030
2
6mer
82-109
0.002
1
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