LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006898
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014543
Biotype: transcript isomorph
Gene id: XLOC_006898
Gene Name: XLOC_006898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1994-2021
0.025
1
6mer
2596-2621
0.005
0
6mer
442-466
0.002
0
XLOC_006790
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014691
Biotype: transcript isomorph
Gene id: XLOC_006790
Gene Name: XLOC_006790
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-175
0.013
1
7mer
544-559
0.010
1
7mer
161-172
0.006
Not Conserved
6mer
232-249
0.003
1
XLOC_006058
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013423
Biotype: transcript isomorph
Gene id: XLOC_006058
Gene Name: XLOC_006058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
737-753
0.015
0
6mer
127-149
0.012
1
6mer
263-285
0.005
0
RP11-703M24.5
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581172
Biotype: antisense
Gene id: ENSG00000266049
Gene Name: RP11-703M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
144-158
0.017
1
6mer
354-368
0.010
1
6mer
524-539
0.005
0
DNM1P35
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501931
Biotype: antisense
Gene id: ENSG00000246877
Gene Name: DNM1P35
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-466
0.013
2
7mer
480-491
0.005
1
7mer
2990-3015
0.004
1
6mer
695-710
0.002
1
8mer
1131-1148
0.002
0
6mer
542-564
0.002
0
6mer
1844-1869
0.001
1
7mer
1105-1121
0.001
1
7mer
615-634
0.001
1
7mer
2964-2985
0.001
Not Conserved
7mer
1134-1150
0.001
0
AC007386.4
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415327
Biotype: antisense
Gene id: ENSG00000232613
Gene Name: AC007386.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-454
0.032
1
LOC730101
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024405.1
Biotype: lincRNA
Gene id: NR_024405.1 (gene)
Gene Name: LOC730101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-352
0.024
0
7mer
751-769
0.004
Not Conserved
6mer
719-739
0.003
0
6mer
1294-1308
0.001
1
RP11-304L19.11
hsa-miR-149-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565709
Biotype: antisense
Gene id: ENSG00000261663
Gene Name: RP11-304L19.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
735-753
0.014
1
6mer
763-785
0.010
1
6mer
284-302
0.004
0
6mer
451-467
0.004
0
CTC-277H1.7
hsa-miR-149-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573063
Biotype: retained_intron
Gene id: ENSG00000262691
Gene Name: CTC-277H1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-367
0.029
0
6mer
582-597
0.003
1
KIZ-AS1
hsa-miR-149-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4863-4886
0.029
1
6mer
1038-1057
0.002
0
6mer
1025-1047
0.001
1
XLOC_013270
hsa-miR-149-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027231
Biotype: transcript isomorph
Gene id: XLOC_013270
Gene Name: XLOC_013270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
181-206
0.016
1
6mer
75-97
0.016
1
RP11-375N15.2
hsa-miR-149-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607598
Biotype: antisense
Gene id: ENSG00000272267
Gene Name: RP11-375N15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
208-225
0.028
0
6mer
459-481
0.004
1
RP11-483H20.4
hsa-miR-149-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455074
Biotype: antisense
Gene id: ENSG00000234789
Gene Name: RP11-483H20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-352
0.030
0
7mer
336-349
0.002
0
AC005008.2
hsa-miR-149-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431501
Biotype: lincRNA
Gene id: ENSG00000237896
Gene Name: AC005008.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-633
0.032
0
TMLHE-AS1
hsa-miR-149-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433624
Biotype: antisense
Gene id: ENSG00000224533
Gene Name: TMLHE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1291-1311
0.027
0
6mer
479-497
0.005
2
LOC730101
hsa-miR-149-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024403.1
Biotype: lincRNA
Gene id: NR_024403.1 (gene)
Gene Name: LOC730101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-352
0.024
0
7mer
751-769
0.004
Not Conserved
6mer
719-739
0.003
0
6mer
1524-1538
0.001
1
TP73-AS1
hsa-miR-149-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423764
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
980-995
0.013
1
8mer
2439-2457
0.010
0
6mer
471-487
0.004
1
6mer
1410-1435
0.002
1
6mer
2459-2481
0.001
0
6mer
2658-2680
0.001
0
6mer
1600-1615
0.001
1
6mer
1573-1599
0.001
2
XLOC_002227
hsa-miR-149-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004353
Biotype: transcript isomorph
Gene id: XLOC_002227
Gene Name: XLOC_002227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1672-1691
0.027
0
7mer
1167-1183
0.005
1
XLOC_008642
hsa-miR-149-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017881
Biotype: transcript isomorph
Gene id: XLOC_008642
Gene Name: XLOC_008642
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
984-998
0.032
0
RP11-379B18.5
hsa-miR-149-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609352
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-126
0.030
4
6mer
504-526
0.001
Not Conserved
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