LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
MIR7515HG
hsa-miR-149-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590961
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
731-751
0.033
0
AC004158.2
hsa-miR-149-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561611
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
328-352
0.015
5
6mer
482-503
0.007
9
6mer
1657-1674
0.004
10
6mer
305-315
0.004
7
6mer
332-352
0.003
2
RP11-45A16.4
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451100
Biotype: antisense
Gene id: ENSG00000244757
Gene Name: RP11-45A16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.029
3
6mer
562-586
0.003
1
RP3-340B19.3
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450618
Biotype: lincRNA
Gene id: ENSG00000228559
Gene Name: RP3-340B19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
321-347
0.027
1
6mer
319-343
0.005
1
XLOC_002384
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1181-1202
0.027
Not Conserved
6mer
260-283
0.005
0
6mer
1162-1175
0.001
0
RP3-510D11.2
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412639
Biotype: lincRNA
Gene id: ENSG00000234546
Gene Name: RP3-510D11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
702-719
0.024
1
8mer
499-515
0.007
0
7mer
422-443
0.002
1
KB-1507C5.3
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523791
Biotype: lincRNA
Gene id: ENSG00000253263
Gene Name: KB-1507C5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-368
0.026
1
6mer
373-389
0.007
2
XLOC_003431
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007959
Biotype: transcript isomorph
Gene id: XLOC_003431
Gene Name: XLOC_003431
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-412
0.018
1
8mer
388-409
0.011
0
6mer
151-170
0.002
0
6mer
123-142
0.002
0
XLOC_007054
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014976
Biotype: transcript isomorph
Gene id: XLOC_007054
Gene Name: XLOC_007054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
127-147
0.029
2
7mer
238-257
0.004
0
XLOC_008883
hsa-miR-149-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-109
0.023
0
8mer
379-403
0.005
0
6mer
76-88
0.003
Not Conserved
6mer
566-589
0.002
0
LINC01061
hsa-miR-149-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2253-2272
0.006
0
6mer
4606-4623
0.003
0
6mer
343-367
0.002
0
6mer
4415-4430
0.002
0
6mer
428-449
0.002
0
6mer
4288-4304
0.002
0
6mer
563-582
0.002
0
6mer
1171-1195
0.002
1
6mer
725-742
0.001
0
6mer
3580-3600
0.001
Not Conserved
6mer
650-666
0.001
0
7mer
1934-1953
0.001
0
7mer
3483-3509
0.001
0
6mer
1250-1267
0.001
0
6mer
3105-3121
0.001
Not Conserved
6mer
1363-1382
0.001
Not Conserved
8mer+mismatch
1807-1824
0.001
Not Conserved
7mer
1712-1739
0.001
Not Conserved
6mer
1326-1347
0.001
0
6mer
2915-2941
0.000
0
6mer
1492-1507
0.000
Not Conserved
6mer
2975-2991
0.000
0
6mer
2840-2858
0.000
0
6mer
2865-2887
0.000
0
RP11-521B24.3
hsa-miR-149-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000504332
Biotype: antisense
Gene id: ENSG00000251602
Gene Name: RP11-521B24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1284-1307
0.010
0
7mer
1004-1030
0.005
Not Conserved
6mer
225-248
0.004
1
7mer
1209-1233
0.004
0
6mer
1347-1372
0.003
0
7mer
1140-1163
0.003
0
6mer
328-339
0.003
0
6mer
1402-1420
0.001
0
GATA2-AS1
hsa-miR-149-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464242
Biotype: antisense
Gene id: ENSG00000244300
Gene Name: GATA2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-102
0.032
5
RP11-221J22.2
hsa-miR-149-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483840
Biotype: lincRNA
Gene id: ENSG00000241280
Gene Name: RP11-221J22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1030-1052
0.031
3
6mer
1622-1641
0.002
1
XLOC_004573
hsa-miR-149-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010104
Biotype: transcript isomorph
Gene id: XLOC_004573
Gene Name: XLOC_004573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
629-644
0.018
6
7mer
191-212
0.012
2
6mer
1334-1351
0.002
1
XLOC_011672
hsa-miR-149-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024350
Biotype: transcript isomorph
Gene id: XLOC_011672
Gene Name: XLOC_011672
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1337-1359
0.025
1
7mer
1337-1356
0.008
1
RP11-221J22.1
hsa-miR-149-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465215
Biotype: lincRNA
Gene id: ENSG00000214407
Gene Name: RP11-221J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1193-1215
0.031
3
6mer
1785-1804
0.002
1
LINC00937
hsa-miR-149-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420040
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-324
0.032
0
XLOC_008619
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018338
Biotype: transcript isomorph
Gene id: XLOC_008619
Gene Name: XLOC_008619
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-233
0.020
1
7mer
224-249
0.005
0
6mer
156-178
0.004
0
6mer
1411-1437
0.003
1
AC009134.1
hsa-miR-149-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571939
Biotype: antisense
Gene id: ENSG00000262116
Gene Name: AC009134.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-206
0.032
0
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