LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LLNLR-246C6.1
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000609708
Biotype: lincRNA
Gene id: ENSG00000273218
Gene Name: LLNLR-246C6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
82-98
0.021
1
6mer
1530-1547
0.003
Not Conserved
6mer
1174-1194
0.002
Not Conserved
6mer
1002-1023
0.002
Not Conserved
6mer
1699-1717
0.002
Not Conserved
6mer
744-769
0.001
Not Conserved
6mer
1327-1345
0.001
Not Conserved
6mer
869-885
0.001
Not Conserved
RP11-326C3.12
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524824
Biotype: lincRNA
Gene id: ENSG00000255328
Gene Name: RP11-326C3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-93
0.015
1
6mer
524-546
0.006
1
6mer
115-138
0.005
1
6mer
214-234
0.004
1
6mer
372-389
0.003
0
CTC-297N7.7
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581947
Biotype: antisense
Gene id: ENSG00000214970
Gene Name: CTC-297N7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
528-550
0.033
1
RP11-360L9.7
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000578500
Biotype: antisense
Gene id: ENSG00000253174
Gene Name: RP11-360L9.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-263
0.028
1
6mer
125-148
0.005
1
AC125421.1
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455366
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2258-2277
0.016
1
7mer
409-427
0.006
1
8mer
1402-1422
0.005
1
7mer
800-825
0.003
1
6mer
286-310
0.003
2
ACVR2B-AS1
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-155
0.012
1
7mer
2481-2501
0.008
1
6mer
356-371
0.003
1
6mer
489-505
0.003
1
6mer
1775-1797
0.002
0
6mer
730-752
0.002
1
6mer
2070-2081
0.001
1
XLOC_005143
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011660
Biotype: transcript isomorph
Gene id: XLOC_005143
Gene Name: XLOC_005143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-281
0.018
1
7mer
1554-1573
0.007
0
6mer
913-938
0.004
0
6mer
373-391
0.003
1
6mer
1608-1623
0.002
0
BIN3-IT1
hsa-miR-149-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027715.1
Biotype: sense
Gene id: NR_027715.1 (gene)
Gene Name: BIN3-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-441
0.016
1
7mer
274-299
0.009
1
7mer
1553-1572
0.006
2
6mer
898-915
0.001
1
XLOC_005024
hsa-miR-149-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010505
Biotype: transcript isomorph
Gene id: XLOC_005024
Gene Name: XLOC_005024
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-33
0.017
1
8mer
162-182
0.016
0
RP11-245C17.2
hsa-miR-149-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558044
Biotype: antisense
Gene id: ENSG00000259654
Gene Name: RP11-245C17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-226
0.028
1
6mer
331-350
0.005
0
RP11-617F23.1
hsa-miR-149-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620791
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
635-649
0.015
1
6mer
309-332
0.007
4
6mer
1983-2006
0.005
0
7mer
687-714
0.004
1
6mer
769-779
0.002
0
6mer
668-694
0.001
1
KMT2E-AS1
hsa-miR-149-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024586.1
Biotype: lincRNA
Gene id: NR_024586.1 (gene)
Gene Name: KMT2E-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3272-3297
0.014
0
7mer
2090-2102
0.007
10
7mer
3235-3250
0.006
Not Conserved
7mer
2977-3001
0.003
6
6mer
3275-3297
0.001
0
6mer
3191-3214
0.001
1
6mer
1537-1562
0.001
0
6mer
1504-1526
0.000
1
RP11-764K9.1
hsa-miR-149-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1694-1712
0.023
0
6mer
1967-1989
0.010
0
URM1
hsa-miR-149-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000609303
Biotype: lincRNA
Gene id: ENSG00000272593
Gene Name: URM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-134
0.029
3
6mer
50-76
0.003
0
CTB-186H2.3
hsa-miR-149-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612584
Biotype: antisense
Gene id: ENSG00000275431
Gene Name: CTB-186H2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3602-3625
0.029
1
6mer
3432-3457
0.003
1
LINC01344
hsa-miR-149-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608183
Biotype: lincRNA
Gene id: ENSG00000228918
Gene Name: LINC01344
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1512-1533
0.022
1
6mer
266-285
0.004
1
6mer
432-452
0.003
0
6mer
562-576
0.002
1
6mer
346-361
0.001
1
6mer
1264-1286
0.001
0
CTD-3065J16.9
hsa-miR-149-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524499
Biotype: antisense
Gene id: ENSG00000255224
Gene Name: CTD-3065J16.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-173
0.025
1
7mer
113-131
0.007
1
6mer
496-511
0.001
1
XLOC_000515
hsa-miR-149-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000061
Biotype: transcript isomorph
Gene id: XLOC_000515
Gene Name: XLOC_000515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
622-646
0.033
9
XLOC_011942
hsa-miR-149-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024654
Biotype: transcript isomorph
Gene id: XLOC_011942
Gene Name: XLOC_011942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
786-805
0.033
0
RP11-212D3.4
hsa-miR-149-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000413763
Biotype: lincRNA
Gene id: ENSG00000226854
Gene Name: RP11-212D3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-146
0.033
0
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