LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_005219
hsa-miR-149-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011166
Biotype: transcript isomorph
Gene id: XLOC_005219
Gene Name: XLOC_005219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2339-2362
0.010
0
7mer
2333-2345
0.005
Not Conserved
9mer
2351-2374
0.004
0
6mer
2526-2548
0.003
1
6mer
2501-2516
0.002
1
6mer
2670-2690
0.002
1
6mer
2252-2267
0.002
0
6mer
2086-2100
0.002
0
7mer
2351-2370
0.002
0
6mer
2334-2358
0.001
0
XLOC_005053
hsa-miR-149-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011070
Biotype: transcript isomorph
Gene id: XLOC_005053
Gene Name: XLOC_005053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-218
0.026
1
7mer
208-233
0.004
1
6mer
1570-1586
0.003
1
RP11-129M16.4
hsa-miR-149-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614747
Biotype: antisense
Gene id: ENSG00000277879
Gene Name: RP11-129M16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1392-1417
0.033
0
CTD-2049O4.1
hsa-miR-149-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000610941
Biotype: antisense
Gene id: ENSG00000261329
Gene Name: CTD-2049O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-769
0.021
1
8mer
593-619
0.007
0
6mer
658-674
0.004
1
7mer
747-769
0.002
1
RP5-1029K10.2
hsa-miR-149-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000514506
Biotype: antisense
Gene id: ENSG00000249906
Gene Name: RP5-1029K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
566-583
0.022
0
8mer
1044-1067
0.008
0
7mer
266-287
0.003
4
XLOC_002331
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004454
Biotype: transcript isomorph
Gene id: XLOC_002331
Gene Name: XLOC_002331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-117
0.027
0
7mer
460-485
0.003
1
6mer
68-85
0.001
0
6mer
545-572
0.001
1
XLOC_010436
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021836
Biotype: transcript isomorph
Gene id: XLOC_010436
Gene Name: XLOC_010436
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
951-970
0.028
4
6mer
943-967
0.005
4
CTD-2021H9.1
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552098
Biotype: lincRNA
Gene id: ENSG00000257265
Gene Name: CTD-2021H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-55
0.030
0
6mer
41-55
0.003
0
XLOC_013163
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026836
Biotype: transcript isomorph
Gene id: XLOC_013163
Gene Name: XLOC_013163
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-110
0.020
1
8mer
183-209
0.008
1
6mer
818-837
0.003
2
6mer
216-233
0.002
0
ZEB1-AS1
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607166
Biotype: antisense
Gene id: ENSG00000237036
Gene Name: ZEB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
844-856
0.013
1
8mer+wobble
2022-2046
0.007
1
8mer+wobble
2027-2046
0.006
1
7mer
625-640
0.004
0
6mer
2278-2304
0.002
0
6mer
1816-1838
0.002
3
6mer
2030-2046
0.001
1
CTD-2621I17.6
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587218
Biotype: lincRNA
Gene id: ENSG00000267522
Gene Name: CTD-2621I17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-110
0.020
1
8mer
183-209
0.008
1
6mer
818-837
0.003
2
6mer
216-233
0.002
0
LINC00323
hsa-miR-149-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_024100.1
Biotype: lincRNA
Gene id: NR_024100.1 (gene)
Gene Name: LINC00323
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1950-1977
0.026
1
6mer
1799-1819
0.004
1
6mer
1935-1955
0.003
1
MIR519A2
hsa-miR-149-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597619
Biotype: lincRNA
Gene id: ENSG00000269842
Gene Name: MIR519A2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2082-2107
0.009
0
7mer
1689-1708
0.005
1
6mer
765-775
0.004
2
6mer
1717-1739
0.003
1
6mer
1859-1875
0.003
0
7mer
729-743
0.002
Not Conserved
7mer
874-900
0.002
0
6mer
887-908
0.002
0
6mer
1279-1295
0.001
0
6mer
1136-1161
0.001
Not Conserved
LINC01391
hsa-miR-149-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483650
Biotype: lincRNA
Gene id: ENSG00000244578
Gene Name: LINC01391
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-140
0.017
0
6mer
816-839
0.007
4
7mer
301-322
0.005
1
6mer
407-426
0.003
3
6mer
651-666
0.002
0
CTD-3080P12.3
hsa-miR-149-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512572
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8-32
0.013
1
6mer
110-134
0.012
1
6mer
96-119
0.005
0
6mer
37-61
0.003
Not Conserved
LINC01012
hsa-miR-149-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038292.1
Biotype: lincRNA
Gene id: NR_038292.1 (gene)
Gene Name: LINC01012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2015-2038
0.010
0
7mer
2009-2021
0.005
Not Conserved
9mer
2027-2050
0.004
0
6mer
2202-2224
0.003
1
6mer
2177-2192
0.002
1
6mer
2346-2366
0.002
1
6mer
1928-1943
0.002
0
6mer
1762-1776
0.002
0
7mer
2027-2046
0.002
0
6mer
2010-2034
0.001
0
LINC01153
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429809
Biotype: lincRNA
Gene id: ENSG00000227143
Gene Name: LINC01153
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2597-2615
0.019
2
7mer
400-413
0.007
1
6mer
1019-1041
0.003
2
6mer
834-850
0.002
1
6mer
1468-1479
0.002
1
RP1-29C18.9
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000393264
Biotype: lincRNA
Gene id: ENSG00000213279
Gene Name: RP1-29C18.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2044-2065
0.014
1
7mer
290-310
0.010
0
8mer
957-980
0.003
0
6mer
1560-1577
0.002
0
6mer
1667-1685
0.001
1
7mer
1392-1412
0.001
1
6mer
960-980
0.001
1
6mer
1110-1132
0.001
1
XLOC_012558
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025741
Biotype: transcript isomorph
Gene id: XLOC_012558
Gene Name: XLOC_012558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
789-808
0.012
0
7mer
436-456
0.010
Not Conserved
6mer
971-989
0.006
1
6mer
766-791
0.005
1
RP11-469N6.2
hsa-miR-149-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529922
Biotype: lincRNA
Gene id: ENSG00000255344
Gene Name: RP11-469N6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-63
0.033
0
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