LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-282A11.3
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000614618
Biotype: lincRNA
Gene id: ENSG00000278698
Gene Name: RP11-282A11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
305-322
0.034
0
LINC00402
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419499
Biotype: lincRNA
Gene id: ENSG00000235532
Gene Name: LINC00402
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2855-2873
0.028
1
6mer
2402-2425
0.003
1
6mer
47-71
0.002
1
RP4-671O14.7
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19034-19056
0.006
2
6mer
1736-1753
0.003
4
6mer
5317-5321
0.003
0
8mer
11834-11856
0.003
0
7mer
8339-8362
0.002
1
6mer
6807-6830
0.002
0
7mer
7627-7653
0.002
0
7mer
6312-6327
0.002
Not Conserved
7mer
12551-12574
0.001
0
6mer
17332-17357
0.001
1
6mer
6601-6617
0.001
Not Conserved
6mer
9251-9275
0.001
Not Conserved
6mer
4645-4661
0.001
2
6mer
10152-10170
0.001
1
6mer
14074-14097
0.001
1
6mer
7175-7191
0.001
1
7mer
7101-7121
0.001
0
6mer
11910-11929
0.001
1
6mer
2329-2348
0.001
0
6mer
10598-10613
0.001
1
6mer
6475-6491
0.000
Not Conserved
6mer
7123-7149
0.000
0
6mer
11837-11856
0.000
0
6mer
12537-12561
0.000
1
6mer
10590-10611
0.000
1
6mer
9215-9239
0.000
0
XLOC_008528
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1415-1439
0.011
1
6mer
148-173
0.011
1
7mer
3789-3812
0.009
1
6mer
3521-3543
0.002
0
RP11-1081L13.4
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527285
Biotype: antisense
Gene id: ENSG00000254966
Gene Name: RP11-1081L13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-99
0.015
1
7mer
52-72
0.010
1
6mer
156-177
0.004
2
6mer
45-61
0.003
1
6mer
27-53
0.002
0
XLOC_003235
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4078-4096
0.011
1
8mer
1287-1309
0.008
1
7mer
3781-3803
0.004
1
8mer
2455-2479
0.003
1
7mer
2830-2851
0.003
0
6mer
4423-4445
0.002
1
6mer
4669-4690
0.001
1
6mer
4046-4066
0.000
2
6mer
1521-1537
0.000
Not Conserved
XLOC_005701
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011214
Biotype: transcript isomorph
Gene id: XLOC_005701
Gene Name: XLOC_005701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-590
0.011
2
7mer
507-533
0.004
0
7mer
501-517
0.004
4
6mer
1771-1787
0.004
0
7mer
580-601
0.003
1
6mer
1515-1532
0.003
1
6mer
698-724
0.003
3
6mer
34-57
0.002
1
6mer
1261-1285
0.001
3
RP11-473M20.7
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2905-2927
0.007
1
7mer
4322-4343
0.004
0
6mer
696-716
0.003
0
7mer
2164-2190
0.003
1
6mer
43-57
0.002
0
7mer
1475-1496
0.002
2
8mer
2876-2893
0.002
1
7mer
1394-1413
0.002
2
6mer
1247-1272
0.002
1
6mer
2939-2958
0.001
2
6mer
4312-4334
0.001
0
7mer
1687-1707
0.001
0
8mer
2009-2030
0.001
0
6mer
2056-2074
0.001
1
6mer
1594-1615
0.000
0
6mer
1910-1930
0.000
0
MEG3
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000455531
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1350
0.008
1
7mer
595-611
0.006
0
6mer
223-239
0.006
1
6mer
362-378
0.004
1
6mer
3399-3422
0.003
4
6mer
1216-1237
0.001
1
6mer
2268-2291
0.001
1
6mer
1310-1335
0.001
1
6mer
869-886
0.001
1
6mer
1996-2022
0.001
4
6mer
1877-1892
0.000
1
6mer
2342-2362
0.000
1
6mer
2114-2129
0.000
0
LINC00856
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432742
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-376
0.034
1
CTB-131B5.5
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-472
0.009
1
7mer
5378-5397
0.007
1
7mer
5594-5614
0.005
1
6mer
694-715
0.004
1
6mer
240-262
0.004
0
6mer
75-94
0.003
1
6mer
937-958
0.001
0
6mer
1208-1228
0.001
1
RP11-218L14.4
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000447347
Biotype: antisense
Gene id: ENSG00000225393
Gene Name: RP11-218L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
469-496
0.018
1
8mer
469-492
0.015
1
RP11-592N21.2
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562681
Biotype: sense_intronic
Gene id: ENSG00000260586
Gene Name: RP11-592N21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
121-146
0.026
1
7mer
217-240
0.004
1
6mer
639-660
0.003
0
AC008063.2
hsa-miR-149-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418335
Biotype: antisense
Gene id: ENSG00000230918
Gene Name: AC008063.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-423
0.014
1
7mer
519-537
0.011
0
6mer
468-483
0.007
2
6mer
404-420
0.002
1
XLOC_008094
hsa-miR-149-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016944
Biotype: transcript isomorph
Gene id: XLOC_008094
Gene Name: XLOC_008094
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
469-496
0.018
1
8mer
469-492
0.015
1
RP11-344E13.3
hsa-miR-149-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577968
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-619
0.030
0
6mer
528-550
0.003
0
ASB16-AS1
hsa-miR-149-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000618557
Biotype: antisense
Gene id: ENSG00000267080
Gene Name: ASB16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-475
0.021
4
6mer
129-151
0.003
0
6mer
267-289
0.003
1
6mer
679-698
0.002
0
6mer
299-323
0.002
1
6mer
1254-1277
0.002
1
RP11-386B13.3
hsa-miR-149-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511746
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
840-863
0.013
14
7mer
718-739
0.009
7
9mer
240-264
0.006
0
6mer
984-1004
0.004
1
7mer
240-260
0.002
0
XLOC_009990
hsa-miR-149-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1165-1184
0.011
1
6mer
180-198
0.011
3
6mer
203-228
0.007
1
6mer
502-523
0.004
0
RP11-379B18.5
hsa-miR-149-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597749
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.031
4
6mer
250-272
0.002
Not Conserved
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