LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
NEAT1
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
889-910
0.012
0
7mer
10031-10054
0.009
1
6mer
20193-20217
0.002
3
7mer
13719-13731
0.002
1
8mer
21711-21733
0.002
1
6mer
7299-7322
0.002
1
6mer
8745-8763
0.002
1
6mer
18593-18612
0.001
0
6mer
11054-11069
0.001
1
6mer
7420-7435
0.000
0
6mer
18611-18626
0.000
1
LINC01287
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
639-666
0.013
0
6mer
236-261
0.011
0
6mer
1939-1959
0.002
Not Conserved
8mer
863-885
0.002
Not Conserved
7mer
2577-2602
0.002
Not Conserved
7mer
2236-2247
0.002
Not Conserved
LINC00114
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411989
Biotype: lincRNA
Gene id: ENSG00000223806
Gene Name: LINC00114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1449-1470
0.029
Not Conserved
7mer
934-956
0.003
0
6mer
1049-1073
0.002
0
SMG7-AS1
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421703
Biotype: lincRNA
Gene id: ENSG00000232860
Gene Name: SMG7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2103-2119
0.012
3
7mer
2106-2123
0.007
4
7mer
1749-1775
0.006
2
6mer
2162-2187
0.005
4
7mer
1525-1545
0.004
1
6mer
1721-1740
0.001
1
RP11-318C2.1
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532930
Biotype: antisense
Gene id: ENSG00000255159
Gene Name: RP11-318C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
572-595
0.026
0
6mer
819-832
0.005
1
7mer
529-554
0.003
0
XLOC_007058
hsa-miR-149-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014979
Biotype: transcript isomorph
Gene id: XLOC_007058
Gene Name: XLOC_007058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-93
0.014
3
7mer
42-60
0.007
4
9mer
63-79
0.007
1
6mer
48-71
0.003
3
6mer
337-357
0.003
0
RP11-16E18.3
hsa-miR-149-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569835
Biotype: lincRNA
Gene id: ENSG00000261542
Gene Name: RP11-16E18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-146
0.031
0
6mer
124-143
0.003
0
CTD-2561J22.5
hsa-miR-149-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
186-204
0.017
1
6mer
20-37
0.017
1
RP11-823E8.3
hsa-miR-149-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611513
Biotype: lincRNA
Gene id: ENSG00000274021
Gene Name: RP11-823E8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1349-1367
0.017
6
7mer
1937-1954
0.014
2
7mer
1941-1959
0.003
1
XLOC_003440
hsa-miR-149-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3109-3125
0.009
1
7mer
507-528
0.006
0
6mer
2970-2991
0.006
1
7mer
1822-1842
0.005
2
7mer
1703-1722
0.005
1
6mer
2934-2959
0.003
0
RP11-379B18.5
hsa-miR-149-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614795
Biotype: retained_intron
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.032
4
6mer
411-433
0.002
Not Conserved
CTD-2619J13.8
hsa-miR-149-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600123
Biotype: processed_transcript
Gene id: ENSG00000268230
Gene Name: CTD-2619J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-125
0.018
0
7mer
49-76
0.008
0
7mer
455-475
0.003
1
6mer
104-127
0.002
0
6mer
1300-1321
0.001
1
6mer
1000-1024
0.001
0
AD000684.2
hsa-miR-149-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602262
Biotype: sense_intronic
Gene id: ENSG00000268947
Gene Name: AD000684.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
916-939
0.032
0
6mer
268-288
0.002
Not Conserved
AC091633.3
hsa-miR-149-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426109
Biotype: antisense
Gene id: ENSG00000223711
Gene Name: AC091633.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-122
0.034
2
LINC00856
hsa-miR-149-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000423770
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-376
0.034
1
AC012594.1
hsa-miR-149-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438635
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
704-720
0.022
0
6mer
688-713
0.007
1
6mer
188-204
0.005
0
NOP14-AS1
hsa-miR-149-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515194
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-555
0.014
0
7mer
55-75
0.005
1
6mer
3545-3569
0.003
1
6mer
55-70
0.002
1
6mer
1531-1555
0.002
1
6mer
677-691
0.002
1
7mer
1938-1957
0.002
0
8mer
2067-2085
0.001
0
6mer
2649-2671
0.001
0
7mer
2094-2116
0.001
0
6mer
2004-2029
0.001
0
6mer
1639-1663
0.000
0
6mer
1565-1585
0.000
Not Conserved
6mer
2211-2235
0.000
0
XLOC_013947
hsa-miR-149-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029024
Biotype: transcript isomorph
Gene id: XLOC_013947
Gene Name: XLOC_013947
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-47
0.011
0
9mer
313-330
0.011
0
6mer
926-946
0.004
Not Conserved
6mer
299-326
0.003
0
6mer
642-669
0.003
Not Conserved
6mer
728-755
0.001
Not Conserved
6mer
570-583
0.001
Not Conserved
XLOC_007710
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1694-1712
0.024
0
6mer
1967-1989
0.010
0
RP11-556E13.1
hsa-miR-149-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448017
Biotype: antisense
Gene id: ENSG00000228651
Gene Name: RP11-556E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-371
0.034
1
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