LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-149-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000579700
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-170
0.024
3
7mer
150-167
0.007
3
6mer
617-639
0.002
0
8mer
771-797
0.001
0
MEG3
hsa-miR-149-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000524035
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
842-864
0.011
1
7mer
109-125
0.009
0
6mer
2576-2600
0.003
3
6mer
730-751
0.002
1
6mer
1782-1805
0.002
1
6mer
383-400
0.002
1
6mer
824-849
0.002
1
6mer
1510-1536
0.001
4
6mer
1856-1876
0.001
1
6mer
1628-1643
0.000
0
6mer
1391-1406
0.000
1
RP11-317N12.1
hsa-miR-149-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523336
Biotype: lincRNA
Gene id: ENSG00000253642
Gene Name: RP11-317N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-682
0.012
1
7mer
360-375
0.008
Not Conserved
7mer
224-241
0.008
0
6mer
746-758
0.007
1
RP11-150O12.6
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521989
Biotype: sense_intronic
Gene id: ENSG00000253414
Gene Name: RP11-150O12.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
222-242
0.030
2
7mer
333-352
0.004
0
HOXC-AS2
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000604081
Biotype: retained_intron
Gene id: ENSG00000250133
Gene Name: HOXC-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1012-1038
0.013
5
8mer
992-1014
0.007
6
6mer
1211-1227
0.005
7
9mer
978-1000
0.004
3
8mer+wobble
1603-1621
0.003
2
8mer
1592-1614
0.002
3
7mer
950-973
0.002
6
RP11-556E13.1
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443523
Biotype: antisense
Gene id: ENSG00000228651
Gene Name: RP11-556E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-90
0.034
1
LINC00987
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_036466.1
Biotype: lincRNA
Gene id: NR_036466.1 (gene)
Gene Name: LINC00987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1778-1793
0.009
1
9mer
1708-1726
0.008
1
7mer
1782-1798
0.004
1
7mer
1694-1706
0.004
1
6mer
1684-1698
0.003
0
6mer
79-105
0.003
0
6mer
1778-1790
0.002
1
6mer
1701-1714
0.001
0
RP11-831A10.2
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534055
Biotype: lincRNA
Gene id: ENSG00000254863
Gene Name: RP11-831A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-364
0.026
3
7mer
350-375
0.004
1
7mer
299-314
0.003
1
6mer
170-188
0.002
0
RP11-310E22.4
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451737
Biotype: antisense
Gene id: ENSG00000234026
Gene Name: RP11-310E22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
412-433
0.024
1
8mer+wobble
383-399
0.010
0
FLJ42627
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024492.1
Biotype: lincRNA
Gene id: NR_024492.1 (gene)
Gene Name: FLJ42627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4132-4152
0.017
1
9mer
6915-6935
0.005
1
9mer
1092-1111
0.004
0
7mer
1185-1203
0.002
1
6mer
3175-3200
0.002
0
6mer
5887-5903
0.001
1
6mer
5749-5765
0.001
0
6mer
2518-2544
0.001
2
7mer
1327-1351
0.001
1
6mer
2411-2428
0.000
1
6mer
1123-1142
0.000
2
SERPINB9P1
hsa-miR-149-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420981
Biotype: lincRNA
Gene id: ENSG00000230438
Gene Name: SERPINB9P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-927
0.028
1
7mer
912-937
0.003
1
6mer
270-295
0.003
0
RP11-728K20.2
hsa-miR-149-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000565102
Biotype: lincRNA
Gene id: ENSG00000260555
Gene Name: RP11-728K20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-163
0.022
0
7mer
2002-2023
0.007
0
6mer
322-339
0.002
1
6mer
40-65
0.002
1
7mer
2250-2266
0.002
0
LOXL1-AS1
hsa-miR-149-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564194
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2219-2231
0.005
2
6mer
2006-2028
0.003
1
6mer
668-684
0.002
1
6mer
1842-1865
0.002
0
RP11-524G24.2
hsa-miR-149-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434375
Biotype: antisense
Gene id: ENSG00000229854
Gene Name: RP11-524G24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
237-253
0.023
1
7mer
51-63
0.007
1
6mer
146-170
0.002
1
6mer
241-268
0.002
1
AC074212.5
hsa-miR-149-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592217
Biotype: retained_intron
Gene id: ENSG00000259605
Gene Name: AC074212.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-485
0.007
5
9mer
464-489
0.007
Not Conserved
7mer
648-663
0.006
5
7mer
487-501
0.003
1
6mer
390-411
0.003
6
6mer
707-722
0.002
5
6mer
660-683
0.002
2
6mer
501-524
0.002
4
6mer
1218-1237
0.002
1
RP11-192P3.4
hsa-miR-149-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000605929
Biotype: lincRNA
Gene id: ENSG00000272381
Gene Name: RP11-192P3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2037-2061
0.018
10
6mer
373-399
0.004
0
6mer
1583-1609
0.003
2
6mer
1327-1343
0.003
1
6mer
217-236
0.002
2
6mer
785-808
0.002
1
6mer
637-659
0.001
0
6mer
609-627
0.001
0
AC006273.4
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000606966
Biotype: lincRNA
Gene id: ENSG00000272473
Gene Name: AC006273.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
823-845
0.014
1
6mer
352-374
0.014
1
6mer
497-520
0.006
0
LINC00987
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000427111
Biotype: lincRNA
Gene id: ENSG00000237248
Gene Name: LINC00987
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1778-1793
0.009
1
9mer
1708-1726
0.007
1
7mer
1782-1798
0.004
1
7mer
1694-1706
0.004
1
6mer
1684-1698
0.003
0
6mer
79-105
0.003
0
6mer
1778-1790
0.002
1
6mer
1701-1714
0.001
0
XLOC_005203
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011737
Biotype: transcript isomorph
Gene id: XLOC_005203
Gene Name: XLOC_005203
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-869
0.026
0
6mer
947-969
0.006
1
6mer
937-956
0.002
0
RP11-73B2.7
hsa-miR-149-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000616616
Biotype: lincRNA
Gene id: ENSG00000268181
Gene Name: RP11-73B2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-203
0.033
1
6mer
1256-1273
0.001
1
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