LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-149-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584900
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-323
0.019
3
7mer
303-320
0.007
3
7mer
50-69
0.007
1
6mer
770-792
0.002
0
8mer
924-950
0.001
0
RP11-7F17.8
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619017
Biotype: antisense
Gene id: ENSG00000273729
Gene Name: RP11-7F17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-84
0.008
8
7mer
680-699
0.007
0
6mer
3212-3227
0.004
3
7mer
791-806
0.003
5
6mer
2878-2903
0.002
1
7mer
791-811
0.002
5
7mer
2316-2339
0.002
1
6mer
1658-1680
0.002
1
6mer
2711-2736
0.001
1
6mer
2871-2890
0.001
0
6mer
2459-2476
0.001
1
6mer
2309-2325
0.001
0
6mer
2282-2306
0.001
1
6mer
1782-1801
0.000
0
LINC01226
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412068
Biotype: lincRNA
Gene id: ENSG00000223907
Gene Name: LINC01226
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2529-2552
0.011
3
7mer
1644-1667
0.007
0
7mer
1579-1596
0.004
1
6mer
2379-2399
0.004
2
6mer
246-265
0.003
0
6mer
1971-1987
0.003
1
6mer
2106-2122
0.002
0
RP11-231I16.1
hsa-miR-149-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548738
Biotype: antisense
Gene id: ENSG00000257279
Gene Name: RP11-231I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1348-1371
0.029
1
7mer
1853-1867
0.005
7
6mer
2034-2051
0.001
2
7mer
1845-1867
0.001
2
XLOC_001489
hsa-miR-149-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002901
Biotype: transcript isomorph
Gene id: XLOC_001489
Gene Name: XLOC_001489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2236-2252
0.014
1
6mer
2375-2385
0.012
1
6mer
1978-2000
0.005
0
6mer
1991-2013
0.003
0
XLOC_002793
hsa-miR-149-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006196
Biotype: transcript isomorph
Gene id: XLOC_002793
Gene Name: XLOC_002793
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-198
0.035
0
RP11-672L10.2
hsa-miR-149-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581719
Biotype: antisense
Gene id: ENSG00000265179
Gene Name: RP11-672L10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3585-3606
0.014
1
9mer
2300-2327
0.012
Not Conserved
7mer
3306-3324
0.006
1
8mer+mismatch
823-847
0.002
3
6mer
2569-2583
0.000
Not Conserved
6mer
2507-2527
0.000
2
6mer
2282-2296
0.000
Not Conserved
RP1-140A9.1
hsa-miR-149-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412228
Biotype: antisense
Gene id: ENSG00000231050
Gene Name: RP1-140A9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-714
0.030
1
6mer
420-437
0.002
1
6mer
770-791
0.002
0
6mer
320-339
0.001
Not Conserved
XLOC_013548
hsa-miR-149-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028197
Biotype: transcript isomorph
Gene id: XLOC_013548
Gene Name: XLOC_013548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
627-646
0.011
1
7mer
355-379
0.006
1
6mer
57-81
0.004
1
7mer
464-484
0.003
0
6mer
256-276
0.003
1
6mer
276-292
0.003
0
6mer
520-536
0.003
0
6mer
45-64
0.002
0
XLOC_010651
hsa-miR-149-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-245
0.035
0
RP11-77P16.4
hsa-miR-149-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000514145
Biotype: lincRNA
Gene id: ENSG00000249846
Gene Name: RP11-77P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-542
0.035
4
SLC16A1-AS1
hsa-miR-149-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428411
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8070-8097
0.018
0
7mer
325-349
0.005
1
7mer
1012-1036
0.004
1
7mer
1045-1066
0.003
1
7mer
1059-1082
0.003
Not Conserved
6mer
3780-3798
0.001
0
6mer
3808-3830
0.000
1
6mer
3955-3965
0.000
0
XLOC_010263
hsa-miR-149-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021000
Biotype: transcript isomorph
Gene id: XLOC_010263
Gene Name: XLOC_010263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1287-1312
0.009
0
9mer
3761-3781
0.005
0
6mer
127-146
0.003
0
7mer
6134-6160
0.003
0
6mer
5897-5907
0.002
1
7mer
3911-3926
0.002
0
8mer+wobble
5459-5484
0.002
0
6mer
2370-2392
0.002
1
6mer
5030-5048
0.001
0
6mer
4669-4690
0.001
0
6mer
2804-2829
0.001
0
8mer
2639-2662
0.001
Not Conserved
6mer
3765-3791
0.001
1
6mer
2630-2648
0.001
1
6mer
5322-5337
0.001
1
6mer
5247-5265
0.001
1
6mer
4648-4673
0.000
0
6mer
2778-2788
0.000
0
RP11-255A11.2
hsa-miR-149-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420315
Biotype: antisense
Gene id: ENSG00000228072
Gene Name: RP11-255A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-338
0.021
0
6mer
167-186
0.013
0
RP5-860P4.2
hsa-miR-149-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432834
Biotype: lincRNA
Gene id: ENSG00000231015
Gene Name: RP5-860P4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
442-457
0.027
0
7mer
442-453
0.008
1
LINC01015
hsa-miR-149-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445296
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
363-387
0.035
1
RP11-222N13.1
hsa-miR-149-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530418
Biotype: lincRNA
Gene id: ENSG00000254661
Gene Name: RP11-222N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-27
0.025
Not Conserved
7mer
80-92
0.009
1
AC008984.2
hsa-miR-149-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616950
Biotype: processed_transcript
Gene id: ENSG00000275210
Gene Name: AC008984.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1690-1714
0.023
2
6mer
310-324
0.005
1
6mer
445-470
0.003
1
6mer
1120-1139
0.002
0
RP11-13K12.2
hsa-miR-149-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592572
Biotype: lincRNA
Gene id: ENSG00000267665
Gene Name: RP11-13K12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-315
0.017
2
7mer
282-297
0.005
1
7mer
3536-3559
0.002
0
6mer
3691-3707
0.002
1
6mer
3516-3542
0.002
1
6mer
1712-1733
0.002
0
6mer
3303-3325
0.002
1
6mer
479-499
0.001
0
6mer
1252-1279
0.001
0
AC008940.1
hsa-miR-149-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000438117
Biotype: lincRNA
Gene id: ENSG00000228650
Gene Name: AC008940.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-449
0.017
1
7mer
95-110
0.010
3
7mer
699-711
0.007
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept