LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
AC025165.8
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000356672
Biotype: antisense
Gene id: ENSG00000224713
Gene Name: AC025165.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-495
0.014
Not Conserved
7mer
2082-2098
0.005
1
7mer
1814-1834
0.005
3
6mer
2023-2041
0.004
8
6mer
339-351
0.003
4
7mer
1507-1524
0.002
2
6mer
1262-1285
0.001
1
6mer
1501-1524
0.001
1
HAND2-AS1
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511728
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-553
0.033
1
6mer
539-550
0.002
1
XLOC_004205
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008689
Biotype: transcript isomorph
Gene id: XLOC_004205
Gene Name: XLOC_004205
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
114-134
0.010
0
7mer
2269-2292
0.008
1
7mer
1603-1620
0.005
0
8mer
4029-4056
0.003
2
6mer
610-635
0.002
1
6mer
4464-4480
0.002
1
6mer
4210-4226
0.002
1
6mer
3127-3152
0.001
1
6mer
4076-4092
0.001
1
RP11-290F5.1
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000617323
Biotype: lincRNA
Gene id: ENSG00000249096
Gene Name: RP11-290F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1676-1703
0.012
2
8mer+wobble
119-139
0.012
0
6mer
1723-1739
0.004
1
6mer
1857-1873
0.004
1
6mer
774-799
0.003
1
XLOC_001229
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001844
Biotype: transcript isomorph
Gene id: XLOC_001229
Gene Name: XLOC_001229
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-223
0.025
1
6mer
317-344
0.010
2
RP11-47I22.2
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000508827
Biotype: lincRNA
Gene id: ENSG00000250548
Gene Name: RP11-47I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
681-699
0.009
Not Conserved
8mer
4180-4201
0.005
0
8mer+wobble
3681-3707
0.005
1
7mer
685-708
0.003
1
6mer
321-344
0.003
1
6mer
4527-4547
0.003
2
6mer
312-324
0.002
1
9mer
1665-1689
0.002
0
6mer
1775-1795
0.001
1
6mer
2778-2795
0.001
1
6mer
3907-3922
0.001
0
SLC25A25-AS1
hsa-miR-149-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418747
Biotype: antisense
Gene id: ENSG00000234771
Gene Name: SLC25A25-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2715-2735
0.008
0
7mer
266-291
0.006
1
7mer
2259-2273
0.004
0
6mer
5942-5959
0.003
1
6mer
5707-5725
0.002
3
6mer
80-105
0.002
0
7mer
4660-4679
0.002
1
6mer
3763-3782
0.001
0
7mer
5124-5149
0.001
0
6mer
4250-4276
0.001
1
6mer
1891-1916
0.001
1
6mer
2965-2983
0.001
0
6mer
2798-2814
0.001
0
6mer
1859-1884
0.001
0
6mer
2195-2221
0.000
0
RP11-121P10.1
hsa-miR-149-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000414505
Biotype: sense_intronic
Gene id: ENSG00000236075
Gene Name: RP11-121P10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
240-266
0.023
Not Conserved
7mer
244-266
0.012
0
XLOC_010279
hsa-miR-149-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
156-180
0.014
0
6mer
450-476
0.013
0
6mer
2110-2133
0.007
0
XLOC_013174
hsa-miR-149-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1195-1217
0.019
0
6mer
1335-1351
0.016
0
AC017116.11
hsa-miR-149-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445938
Biotype: sense_overlapping
Gene id: ENSG00000239775
Gene Name: AC017116.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-136
0.032
2
6mer
278-299
0.003
6
XLOC_004394
hsa-miR-149-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009404
Biotype: transcript isomorph
Gene id: XLOC_004394
Gene Name: XLOC_004394
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-449
0.017
1
7mer
95-110
0.010
3
7mer
699-711
0.008
0
CTD-2620I22.3
hsa-miR-149-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3197-3222
0.028
0
6mer
3391-3407
0.004
1
6mer
3529-3547
0.003
1
LINC01317
hsa-miR-149-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442026
Biotype: lincRNA
Gene id: ENSG00000203386
Gene Name: LINC01317
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
180-197
0.031
0
6mer
180-193
0.004
0
LINC00550
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-248
0.035
0
XLOC_014400
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029724
Biotype: transcript isomorph
Gene id: XLOC_014400
Gene Name: XLOC_014400
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2422-2447
0.016
0
9mer
2025-2044
0.008
1
6mer
244-261
0.003
2
6mer
2307-2330
0.003
0
6mer
2425-2447
0.002
0
7mer
2074-2087
0.001
0
6mer
1831-1852
0.001
0
6mer
1320-1340
0.001
1
PSMD5-AS1
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447891
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3110-3136
0.029
1
6mer
406-424
0.003
1
6mer
570-585
0.003
4
THUMPD3-AS1
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468186
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2924-2946
0.011
4
9mer
2482-2497
0.010
1
7mer
2233-2252
0.007
1
6mer
2965-2983
0.003
0
6mer
2088-2105
0.003
3
6mer
2346-2365
0.002
0
RP11-481G8.2
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427035
Biotype: lincRNA
Gene id: ENSG00000229569
Gene Name: RP11-481G8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1975-1994
0.027
1
6mer
1674-1694
0.004
1
6mer
1661-1683
0.003
0
6mer
1538-1560
0.002
1
RP11-94C24.13
hsa-miR-149-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620769
Biotype: lincRNA
Gene id: ENSG00000275897
Gene Name: RP11-94C24.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
58-74
0.010
0
6mer
2512-2527
0.004
1
7mer
1141-1164
0.003
1
6mer
243-260
0.003
2
6mer
2085-2102
0.002
1
6mer
1917-1935
0.002
1
6mer
1468-1486
0.001
1
6mer
1946-1967
0.001
0
6mer
1929-1955
0.001
1
6mer
551-572
0.001
1
6mer
1635-1652
0.001
0
6mer
1280-1296
0.001
1
6mer
263-284
0.001
0
6mer
431-452
0.001
0
6mer
287-308
0.001
Not Conserved
6mer
1496-1518
0.001
1
6mer
359-380
0.001
Not Conserved
6mer
479-500
0.001
Not Conserved
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