LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP13-228J13.1
hsa-miR-149-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412436
Biotype: antisense
Gene id: ENSG00000224216
Gene Name: RP13-228J13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-412
0.028
0
6mer
1206-1224
0.008
2
CTA-929C8.9
hsa-miR-149-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1536-1553
0.006
1
7mer
13848-13866
0.006
1
7mer
10850-10867
0.003
0
6mer
12432-12452
0.002
1
7mer
15487-15507
0.002
0
6mer
14210-14235
0.002
1
6mer
14421-14437
0.002
1
6mer
8072-8093
0.002
1
6mer
7000-7012
0.002
1
6mer
5085-5100
0.002
2
6mer
17173-17192
0.001
1
6mer
15280-15296
0.001
1
6mer
14799-14825
0.001
1
6mer
4950-4976
0.001
0
6mer
24175-24197
0.001
0
6mer
11082-11096
0.001
Not Conserved
6mer
20304-20326
0.001
0
6mer
19769-19789
0.001
0
RP11-669N7.2
hsa-miR-149-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000512133
Biotype: retained_intron
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-721
0.014
1
8mer
691-718
0.007
0
8mer
968-986
0.005
0
7mer
87-114
0.005
Not Conserved
6mer
68-92
0.002
0
7mer
959-983
0.002
0
6mer
455-476
0.001
0
LINC01001
hsa-miR-149-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000607448
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
107-129
0.009
1
6mer
1465-1487
0.005
0
6mer
238-253
0.005
1
6mer
120-139
0.005
0
6mer
429-446
0.003
0
6mer
1098-1117
0.002
Not Conserved
6mer
1085-1107
0.002
Not Conserved
6mer
1176-1203
0.002
Not Conserved
6mer
199-225
0.002
Not Conserved
6mer
929-948
0.001
Not Conserved
RP13-1032I1.7
hsa-miR-149-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575312
Biotype: antisense
Gene id: ENSG00000262049
Gene Name: RP13-1032I1.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-538
0.027
2
8mer+wobble
144-165
0.004
0
7mer
147-165
0.003
0
6mer
1322-1345
0.001
0
6mer
1251-1271
0.001
0
XLOC_009164
hsa-miR-149-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019147
Biotype: transcript isomorph
Gene id: XLOC_009164
Gene Name: XLOC_009164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-561
0.018
1
7mer
294-314
0.012
5
6mer
252-269
0.006
1
XLOC_009762
hsa-miR-149-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020432
Biotype: transcript isomorph
Gene id: XLOC_009762
Gene Name: XLOC_009762
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
743-766
0.036
3
C1orf132
hsa-miR-149-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
14415-14430
0.004
5
7mer
12381-12398
0.003
2
6mer
1031-1055
0.003
4
9mer
6299-6319
0.003
0
7mer
6666-6690
0.003
1
7mer
10290-10312
0.002
2
6mer
14122-14140
0.002
3
7mer
10981-11001
0.002
0
7mer
6074-6096
0.002
Not Conserved
9mer
5628-5653
0.002
0
6mer
5228-5252
0.001
1
6mer
10121-10138
0.001
1
7mer
6577-6595
0.001
5
6mer
7940-7962
0.001
1
6mer
3054-3070
0.001
1
6mer
4834-4861
0.001
1
6mer
14388-14411
0.001
2
6mer
4062-4079
0.001
0
7mer
6266-6285
0.001
1
6mer
5632-5653
0.000
0
RP11-488C13.5
hsa-miR-149-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556072
Biotype: lincRNA
Gene id: ENSG00000258301
Gene Name: RP11-488C13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1632-1658
0.018
1
6mer
120-143
0.008
7
8mer+mismatch
131-152
0.008
5
6mer
890-908
0.002
1
RP11-1096D5.1
hsa-miR-149-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_103449.1
Biotype: lincRNA
Gene id: NR_103449.1 (gene)
Gene Name: RP11-1096D5.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3136-3157
0.014
0
9mer
595-620
0.009
0
7mer
519-537
0.004
1
7mer
1786-1804
0.004
1
6mer
2437-2459
0.002
1
6mer
2293-2312
0.002
1
6mer
593-616
0.001
0
XLOC_005768
hsa-miR-149-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012214
Biotype: transcript isomorph
Gene id: XLOC_005768
Gene Name: XLOC_005768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11-28
0.036
1
RP11-933H2.4
hsa-miR-149-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502521
Biotype: antisense
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-399
0.025
1
7mer
52-70
0.008
1
6mer
361-382
0.002
1
CTB-96E2.10
hsa-miR-149-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613598
Biotype: sense_intronic
Gene id: ENSG00000277450
Gene Name: CTB-96E2.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
40-64
0.036
1
RP11-251P6.1
hsa-miR-149-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624229
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-532
0.017
0
7mer
35-48
0.014
1
6mer
295-315
0.003
0
6mer
460-485
0.002
Not Conserved
XLOC_000169
hsa-miR-149-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000926
Biotype: transcript isomorph
Gene id: XLOC_000169
Gene Name: XLOC_000169
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-304
0.030
2
6mer
17-33
0.006
0
LOC401557
hsa-miR-149-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046107.1
Biotype: lincRNA
Gene id: NR_046107.1 (gene)
Gene Name: LOC401557
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3040-3063
0.012
0
8mer
1176-1186
0.009
0
7mer
3468-3481
0.006
1
7mer
2057-2081
0.003
0
7mer
1674-1697
0.002
1
6mer
1453-1473
0.001
1
6mer
1017-1037
0.001
1
6mer
2601-2620
0.001
1
RP11-131K5.2
hsa-miR-149-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
11-36
0.015
1
7mer
1907-1934
0.015
0
7mer
728-742
0.006
0
LINC01001
hsa-miR-149-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2346-2368
0.007
1
8mer+wobble
12-32
0.006
Not Conserved
6mer
130-154
0.004
0
6mer
2359-2378
0.003
0
6mer
1995-2010
0.002
0
6mer
613-635
0.002
0
6mer
2438-2465
0.002
Not Conserved
6mer
2186-2203
0.001
Not Conserved
6mer
299-318
0.001
Not Conserved
6mer
1868-1884
0.001
Not Conserved
6mer
805-824
0.001
Not Conserved
7mer
385-412
0.001
Not Conserved
6mer
692-709
0.001
Not Conserved
6mer
1159-1179
0.001
Not Conserved
7mer
1061-1087
0.001
Not Conserved
6mer
768-789
0.001
Not Conserved
CTD-2054N24.2
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000622345
Biotype: lincRNA
Gene id: ENSG00000259363
Gene Name: CTD-2054N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-294
0.019
0
8mer
284-301
0.016
1
MATN1-AS1
hsa-miR-149-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414532
Biotype: antisense
Gene id: ENSG00000186056
Gene Name: MATN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3664-3678
0.017
0
7mer
1098-1113
0.005
4
6mer
412-432
0.002
6
6mer
3661-3675
0.002
1
8mer
1631-1648
0.002
0
7mer
639-663
0.002
1
6mer
2575-2591
0.002
1
6mer
2104-2116
0.002
1
6mer
14-35
0.001
0
6mer
1663-1689
0.000
2
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