LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-284M14.1
hsa-miR-149-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507486
Biotype: antisense
Gene id: ENSG00000250326
Gene Name: RP11-284M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
706-720
0.016
Not Conserved
9mer
725-739
0.011
1
7mer
37-61
0.005
0
6mer
690-716
0.003
0
7mer
709-720
0.001
Not Conserved
RP11-6I2.3
hsa-miR-149-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519323
Biotype: lincRNA
Gene id: ENSG00000254288
Gene Name: RP11-6I2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-628
0.036
1
CTA-732E4.1
hsa-miR-149-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624817
Biotype: antisense
Gene id: ENSG00000280258
Gene Name: CTA-732E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3397-3412
0.011
0
8mer
841-860
0.008
1
7mer
5615-5641
0.004
Not Conserved
7mer
840-857
0.003
1
6mer
5789-5805
0.003
0
6mer
5002-5025
0.002
1
6mer
5647-5672
0.002
0
6mer
852-873
0.002
1
6mer
812-837
0.002
1
PRKCQ-AS1
hsa-miR-149-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623160
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-512
0.030
1
6mer
325-349
0.003
0
6mer
503-525
0.003
1
RP11-378J18.9
hsa-miR-149-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621440
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
145-167
0.016
1
6mer
158-177
0.016
1
6mer
237-259
0.004
0
AC010761.10
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579468
Biotype: antisense
Gene id: ENSG00000265840
Gene Name: AC010761.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-151
0.034
0
6mer
137-164
0.002
0
AC022007.5
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437616
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-184
0.036
0
LINC00421
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
874-899
0.024
0
6mer
267-285
0.012
0
RP11-439E19.9
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000570141
Biotype: lincRNA
Gene id: ENSG00000260698
Gene Name: RP11-439E19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-93
0.026
0
6mer
662-685
0.003
3
6mer
2881-2898
0.003
1
6mer
2329-2348
0.002
0
6mer
1994-2020
0.001
1
6mer
1856-1873
0.001
1
RP11-379B18.5
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600712
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.031
4
6mer
415-432
0.004
1
6mer
549-571
0.002
Not Conserved
RP11-552M11.8
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564771
Biotype: sense_overlapping
Gene id: ENSG00000260948
Gene Name: RP11-552M11.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-473
0.024
0
8mer
400-426
0.012
1
AC093495.4
hsa-miR-149-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420253
Biotype: antisense
Gene id: ENSG00000228242
Gene Name: AC093495.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-708
0.024
1
8mer+wobble
820-836
0.010
1
7mer
689-705
0.003
1
HCG18
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3280-3297
0.008
0
7mer
4099-4123
0.007
1
7mer
1286-1308
0.006
1
8mer
1197-1215
0.006
1
6mer
3672-3690
0.003
1
6mer
871-886
0.003
2
6mer
4059-4074
0.002
1
6mer
1200-1219
0.001
1
XLOC_007598
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016208
Biotype: transcript isomorph
Gene id: XLOC_007598
Gene Name: XLOC_007598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-295
0.030
0
6mer
829-853
0.003
0
6mer
848-869
0.003
0
LINC00861
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518964
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-244
0.036
0
XLOC_005501
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-103
0.028
0
6mer
782-802
0.008
1
XLOC_008043
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017228
Biotype: transcript isomorph
Gene id: XLOC_008043
Gene Name: XLOC_008043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-425
0.022
1
6mer
297-309
0.004
3
6mer
2129-2147
0.003
0
7mer
410-422
0.002
1
6mer
1635-1645
0.002
1
6mer
1809-1834
0.001
0
6mer
1846-1866
0.001
0
RP5-1198O20.4
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431800
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
509-531
0.028
1
7mer
191-212
0.005
0
6mer
509-527
0.003
0
PCBP1-AS1
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596665
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-48
0.031
0
6mer
221-243
0.002
0
6mer
234-253
0.002
Not Conserved
RP11-49K24.8
hsa-miR-149-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591183
Biotype: antisense
Gene id: ENSG00000267724
Gene Name: RP11-49K24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1485-1500
0.033
1
6mer
374-400
0.003
1
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