LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LINC00937
hsa-miR-149-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538304
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1905-1919
0.032
0
7mer
1164-1184
0.004
Not Conserved
6mer
692-709
0.002
Not Conserved
AC022007.5
hsa-miR-149-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454232
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-148
0.037
0
RP1-37C10.3
hsa-miR-149-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446261
Biotype: antisense
Gene id: ENSG00000226526
Gene Name: RP1-37C10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-449
0.035
2
7mer
399-422
0.002
1
RP11-862G15.1
hsa-miR-149-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557689
Biotype: lincRNA
Gene id: ENSG00000258742
Gene Name: RP11-862G15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1046-1069
0.026
0
9mer
783-803
0.010
1
6mer
515-534
0.001
0
XLOC_007605
hsa-miR-149-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016213
Biotype: transcript isomorph
Gene id: XLOC_007605
Gene Name: XLOC_007605
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
789-808
0.037
1
OPCML-IT1
hsa-miR-149-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533859
Biotype: sense_intronic
Gene id: ENSG00000254896
Gene Name: OPCML-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2432-2453
0.031
1
7mer
595-619
0.004
1
6mer
581-604
0.001
Not Conserved
XLOC_012868
hsa-miR-149-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026548
Biotype: transcript isomorph
Gene id: XLOC_012868
Gene Name: XLOC_012868
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-235
0.037
1
RP11-863P13.3
hsa-miR-149-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568031
Biotype: lincRNA
Gene id: ENSG00000261327
Gene Name: RP11-863P13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-981
0.023
0
7mer
992-1010
0.006
0
6mer
905-920
0.003
1
7mer
968-986
0.003
0
6mer
1024-1048
0.002
0
RP11-567E21.3
hsa-miR-149-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453155
Biotype: antisense
Gene id: ENSG00000229821
Gene Name: RP11-567E21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-523
0.022
1
7mer
356-379
0.009
5
6mer
196-213
0.004
1
7mer
349-368
0.002
0
HCG18
hsa-miR-149-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444126
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3280-3297
0.007
0
7mer
1286-1308
0.006
1
7mer
4313-4337
0.006
1
8mer
1197-1215
0.006
1
6mer
4188-4211
0.003
1
6mer
871-886
0.003
2
6mer
3672-3690
0.002
1
6mer
4059-4080
0.002
1
6mer
1200-1219
0.001
1
RP11-407N17.4
hsa-miR-149-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556537
Biotype: antisense
Gene id: ENSG00000259083
Gene Name: RP11-407N17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-201
0.034
4
6mer
388-410
0.002
3
6mer
189-208
0.001
Not Conserved
LINC00852
hsa-miR-149-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475197
Biotype: antisense
Gene id: ENSG00000231177
Gene Name: LINC00852
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-457
0.037
0
IL21-AS1
hsa-miR-149-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000417927
Biotype: antisense
Gene id: ENSG00000227145
Gene Name: IL21-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3605-3617
0.025
0
7mer
3041-3063
0.006
2
7mer
3590-3613
0.006
1
LINC00852
hsa-miR-149-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000538717
Biotype: antisense
Gene id: ENSG00000231177
Gene Name: LINC00852
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-457
0.037
0
RP11-640N11.2
hsa-miR-149-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-252
0.011
1
6mer
6132-6146
0.004
1
7mer
3884-3907
0.003
1
6mer
142-162
0.003
1
9mer
3868-3886
0.002
0
6mer
1210-1225
0.002
1
7mer
1825-1851
0.002
2
7mer
4511-4525
0.002
0
6mer
1060-1079
0.001
1
6mer
3319-3344
0.001
Not Conserved
7mer
2650-2672
0.001
1
6mer
1723-1748
0.001
3
9mer
2646-2668
0.001
0
8mer+mismatch
3536-3553
0.001
0
6mer
3703-3728
0.001
0
6mer
3202-3218
0.001
2
6mer
3194-3212
0.000
1
6mer
3688-3708
0.000
Not Conserved
XLOC_000480
hsa-miR-149-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000344
Biotype: transcript isomorph
Gene id: XLOC_000480
Gene Name: XLOC_000480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-430
0.017
1
8mer
186-212
0.016
0
6mer
51-73
0.004
0
LINC00494
hsa-miR-149-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433094
Biotype: lincRNA
Gene id: ENSG00000235621
Gene Name: LINC00494
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-157
0.024
1
7mer
2832-2846
0.007
1
6mer
3005-3020
0.003
1
6mer
812-835
0.002
Not Conserved
6mer
1084-1105
0.001
Not Conserved
XLOC_000506
hsa-miR-149-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000359
Biotype: transcript isomorph
Gene id: XLOC_000506
Gene Name: XLOC_000506
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-108
0.036
1
XLOC_010290
hsa-miR-149-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
874-899
0.025
0
6mer
267-285
0.012
0
AC022007.5
hsa-miR-149-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000621000
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-266
0.036
0
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