LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
C16orf3
hsa-miR-149-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000408886
Biotype: antisense
Gene id: ENSG00000221819
Gene Name: C16orf3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-399
0.038
1
XLOC_013056
hsa-miR-149-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027011
Biotype: transcript isomorph
Gene id: XLOC_013056
Gene Name: XLOC_013056
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-162
0.038
1
HCG18
hsa-miR-149-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426882
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3280-3297
0.006
0
8mer
1197-1215
0.006
1
7mer
1286-1308
0.006
1
7mer
4651-4676
0.006
5
6mer
4638-4662
0.003
6
6mer
4059-4080
0.003
1
6mer
871-886
0.003
2
6mer
3672-3690
0.002
1
6mer
1200-1219
0.001
1
6mer
4263-4281
0.001
0
AC013472.3
hsa-miR-149-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000380387
Biotype: antisense
Gene id: ENSG00000205500
Gene Name: AC013472.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1102
0.011
1
7mer
3-29
0.009
0
7mer
1895-1917
0.003
Not Conserved
6mer
201-211
0.003
1
6mer
1577-1586
0.003
0
6mer
1644-1658
0.002
1
6mer
332-354
0.002
1
6mer
364-382
0.002
1
6mer
1072-1097
0.002
3
LA16c-358B7.3
hsa-miR-149-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567829
Biotype: antisense
Gene id: ENSG00000261505
Gene Name: LA16c-358B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-704
0.018
0
8mer+wobble
2218-2243
0.009
1
7mer
1711-1725
0.003
0
6mer
2697-2719
0.002
0
6mer
18-40
0.002
0
6mer
879-895
0.002
0
6mer
1051-1065
0.001
1
6mer
2201-2216
0.001
0
6mer
1499-1515
0.001
0
LINC00665
hsa-miR-149-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000412740
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-141
0.024
1
6mer
243-269
0.011
1
6mer
399-416
0.003
Not Conserved
CACNA1G-AS1
hsa-miR-149-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000505793
Biotype: antisense
Gene id: ENSG00000250107
Gene Name: CACNA1G-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1350-1374
0.021
4
7mer
1151-1177
0.007
1
7mer
856-874
0.005
0
6mer
592-616
0.002
2
6mer
445-467
0.002
1
6mer
842-864
0.001
1
RP11-529E10.6
hsa-miR-149-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
297-317
0.019
0
6mer
457-481
0.012
0
6mer
290-317
0.007
0
PTPRD-AS1
hsa-miR-149-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447950
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.031
2
7mer
40-57
0.004
3
7mer
132-153
0.003
0
THUMPD3-AS1
hsa-miR-149-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000524210
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2258-2280
0.012
4
9mer
1816-1831
0.012
1
7mer
1567-1586
0.007
1
6mer
2299-2317
0.003
0
6mer
1422-1439
0.003
3
6mer
1680-1699
0.002
0
PCBP1-AS1
hsa-miR-149-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598586
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-277
0.011
1
7mer
365-389
0.009
1
7mer
350-376
0.008
Not Conserved
7mer
502-521
0.007
2
6mer
404-428
0.002
1
AC018685.2
hsa-miR-149-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457813
Biotype: lincRNA
Gene id: ENSG00000227364
Gene Name: AC018685.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-85
0.027
0
7mer
235-254
0.005
0
7mer
37-49
0.005
0
RP11-379B18.5
hsa-miR-149-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609312
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-126
0.033
4
6mer
321-338
0.005
1
USP2-AS1
hsa-miR-149-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530002
Biotype: antisense
Gene id: ENSG00000245248
Gene Name: USP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-666
0.015
1
8mer+wobble
303-327
0.012
1
7mer
625-650
0.006
3
6mer
647-660
0.004
2
TSIX
hsa-miR-149-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15768-15791
0.005
Not Conserved
7mer
17661-17685
0.005
1
8mer+mismatch
29467-29488
0.004
6
6mer
982-999
0.003
2
6mer
600-625
0.003
0
6mer
6025-6044
0.002
1
6mer
18027-18054
0.002
1
6mer
29009-29035
0.002
1
6mer
747-763
0.001
0
6mer
22854-22876
0.001
1
6mer
18614-18630
0.001
1
6mer
18836-18856
0.001
1
6mer
24743-24764
0.001
1
6mer
6618-6640
0.001
1
6mer
16327-16343
0.001
Not Conserved
6mer
18436-18461
0.001
1
6mer
24030-24057
0.001
1
6mer
15768-15788
0.001
Not Conserved
6mer
6480-6497
0.001
Not Conserved
LL22NC03-27C5.1
hsa-miR-149-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624219
Biotype: lincRNA
Gene id: ENSG00000278890
Gene Name: LL22NC03-27C5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-577
0.018
1
7mer
553-574
0.007
2
7mer
896-912
0.006
Not Conserved
8mer
2009-2024
0.003
0
6mer
521-545
0.002
0
6mer
2397-2414
0.001
0
6mer
2479-2496
0.001
0
RP4-561L24.3
hsa-miR-149-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000565336
Biotype: lincRNA
Gene id: ENSG00000260464
Gene Name: RP4-561L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-502
0.030
1
7mer
1054-1071
0.008
3
LINC01069
hsa-miR-149-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_108076.1
Biotype: lincRNA
Gene id: NR_108076.1 (gene)
Gene Name: LINC01069
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-198
0.019
0
9mer
206-227
0.014
Not Conserved
6mer
482-508
0.004
1
XLOC_004581
hsa-miR-149-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009526
Biotype: transcript isomorph
Gene id: XLOC_004581
Gene Name: XLOC_004581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2869-2888
0.010
3
6mer
3569-3587
0.006
7
7mer
2380-2400
0.005
4
7mer
87-98
0.004
Not Conserved
7mer
2324-2338
0.004
5
7mer
87-103
0.003
0
6mer
626-642
0.002
0
6mer
592-610
0.002
0
6mer
758-775
0.001
0
7mer
1556-1578
0.001
1
XLOC_009349
hsa-miR-149-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020033
Biotype: transcript isomorph
Gene id: XLOC_009349
Gene Name: XLOC_009349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-394
0.028
1
6mer
744-758
0.009
1
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