LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009043
hsa-miR-149-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-128
0.023
0
6mer
666-686
0.015
0
CTD-3092A11.2
hsa-miR-149-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602663
Biotype: sense_intronic
Gene id: ENSG00000270055
Gene Name: CTD-3092A11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-414
0.022
1
7mer
379-399
0.011
1
6mer
291-308
0.003
0
7mer
1361-1376
0.002
0
MIR497HG
hsa-miR-149-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443997
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-76
0.029
9
7mer
675-696
0.007
4
7mer
314-329
0.002
0
AC073283.4
hsa-miR-149-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450550
Biotype: lincRNA
Gene id: ENSG00000234690
Gene Name: AC073283.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-91
0.026
1
8mer
104-131
0.013
0
RP11-728G15.1
hsa-miR-149-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540369
Biotype: antisense
Gene id: ENSG00000256008
Gene Name: RP11-728G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-565
0.038
0
XLOC_005965
hsa-miR-149-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014064
Biotype: transcript isomorph
Gene id: XLOC_005965
Gene Name: XLOC_005965
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1545-1563
0.008
Not Conserved
9mer
1523-1547
0.005
Not Conserved
9mer
1537-1555
0.005
Not Conserved
8mer
1493-1511
0.004
Not Conserved
7mer
1501-1527
0.004
0
9mer
1507-1531
0.004
Not Conserved
8mer
346-361
0.003
0
7mer
1523-1543
0.003
Not Conserved
6mer
388-413
0.001
0
LINC00680
hsa-miR-149-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-373
0.017
0
7mer
1665-1683
0.017
0
6mer
816-833
0.005
0
ASB16-AS1
hsa-miR-149-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588785
Biotype: antisense
Gene id: ENSG00000267080
Gene Name: ASB16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-206
0.031
4
6mer
535-555
0.003
3
6mer
30-54
0.003
1
6mer
440-458
0.002
1
FER1L6-AS1
hsa-miR-149-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518567
Biotype: antisense
Gene id: ENSG00000181171
Gene Name: FER1L6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1979-2000
0.020
1
7mer
2125-2145
0.012
0
6mer
615-635
0.003
0
6mer
1983-2000
0.003
1
EGFLAM-AS4
hsa-miR-149-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046219.1
Biotype: antisense
Gene id: NR_046219.1 (gene)
Gene Name: EGFLAM-AS4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-69
0.023
1
7mer
221-239
0.008
0
6mer
1429-1444
0.002
0
6mer
531-544
0.002
1
6mer
374-390
0.002
0
CTB-140J7.2
hsa-miR-149-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517474
Biotype: antisense
Gene id: ENSG00000253852
Gene Name: CTB-140J7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-494
0.038
1
GABPB1-AS1
hsa-miR-149-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619314
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-268
0.038
8
PCBP1-AS1
hsa-miR-149-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416395
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2275-2301
0.021
0
8mer
491-504
0.012
1
6mer
265-279
0.002
3
6mer
1594-1619
0.001
Not Conserved
6mer
1460-1476
0.001
0
6mer
1626-1640
0.001
0
EGFLAM-AS4
hsa-miR-149-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512496
Biotype: antisense
Gene id: ENSG00000248730
Gene Name: EGFLAM-AS4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-74
0.023
1
7mer
226-244
0.008
0
6mer
1434-1449
0.002
0
6mer
536-549
0.002
1
6mer
379-395
0.002
0
AC017116.11
hsa-miR-149-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425727
Biotype: sense_overlapping
Gene id: ENSG00000239775
Gene Name: AC017116.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-39
0.035
2
6mer
181-202
0.003
6
LL22NC03-22D1.1
hsa-miR-149-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28831-28853
0.006
0
7mer
28338-28348
0.005
1
9mer
10546-10565
0.003
Not Conserved
7mer
3758-3779
0.003
1
6mer
25450-25463
0.002
2
6mer
26486-26511
0.002
2
6mer
25659-25683
0.002
1
6mer
5092-5104
0.002
3
7mer
10441-10457
0.002
0
7mer
10473-10489
0.001
0
6mer
10410-10427
0.001
1
6mer
7023-7049
0.001
2
6mer
22112-22134
0.001
1
6mer
10895-10913
0.001
0
6mer
11093-11114
0.001
Not Conserved
6mer
16012-16027
0.001
1
6mer
4194-4217
0.001
1
6mer
7852-7876
0.001
0
6mer
22254-22269
0.001
1
6mer
10535-10561
0.000
0
6mer
16018-16034
0.000
Not Conserved
XLOC_003240
hsa-miR-149-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8894-8919
0.015
1
8mer
3226-3243
0.007
0
6mer
9112-9130
0.003
1
6mer
1262-1283
0.002
0
7mer
1625-1642
0.002
0
6mer
8620-8640
0.002
0
6mer
2204-2227
0.002
0
6mer
1836-1854
0.001
1
7mer
7308-7331
0.001
2
6mer
1670-1686
0.001
1
6mer
5404-5419
0.001
0
6mer
6642-6656
0.001
0
6mer
5320-5344
0.001
0
6mer
7292-7315
0.000
1
RP11-540K16.2
hsa-miR-149-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456771
Biotype: lincRNA
Gene id: ENSG00000225359
Gene Name: RP11-540K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-193
0.017
1
6mer
491-515
0.011
3
7mer
179-202
0.010
3
DARS-AS1
hsa-miR-149-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446492
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-31
0.038
9
ASH1L-AS1
hsa-miR-149-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452809
Biotype: antisense
Gene id: ENSG00000235919
Gene Name: ASH1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-190
0.030
4
6mer
628-648
0.005
0
8mer+wobble
389-412
0.003
1
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