LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-90P13.1
hsa-miR-149-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000567533
Biotype: lincRNA
Gene id: ENSG00000261795
Gene Name: RP11-90P13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1044-1060
0.025
1
8mer
2881-2902
0.007
0
7mer
2548-2566
0.004
1
7mer
1693-1709
0.002
0
7mer
1643-1668
0.002
1
LINC00936
hsa-miR-149-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_028138.1
Biotype: antisense
Gene id: NR_028138.1 (gene)
Gene Name: LINC00936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-649
0.027
8
6mer
262-285
0.006
6
6mer
293-309
0.003
6
7mer
924-947
0.003
3
LINC00461
hsa-miR-149-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3495-3514
0.022
5
8mer
3468-3482
0.008
4
6mer
1737-1750
0.004
11
7mer
3498-3514
0.003
4
6mer
3480-3496
0.002
1
7mer
2023-2049
0.001
0
PTENP1-AS
hsa-miR-149-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_103745.1
Biotype: lincRNA
Gene id: NR_103745.1 (gene)
Gene Name: PTENP1-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
751-764
0.035
0
6mer
133-156
0.004
0
FAM223A
hsa-miR-149-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598177
Biotype: lincRNA
Gene id: ENSG00000272681
Gene Name: FAM223A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-647
0.020
0
6mer
638-657
0.015
1
6mer
588-605
0.004
0
RP11-553A21.3
hsa-miR-149-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000428865
Biotype: antisense
Gene id: ENSG00000231652
Gene Name: RP11-553A21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1094-1114
0.017
10
7mer
1871-1884
0.017
4
6mer
558-577
0.004
0
6mer
1069-1081
0.001
1
RP11-433J8.1
hsa-miR-149-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553378
Biotype: lincRNA
Gene id: ENSG00000258702
Gene Name: RP11-433J8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2378-2395
0.027
1
6mer
731-747
0.005
1
7mer
311-330
0.003
2
6mer
524-544
0.002
Not Conserved
6mer
341-359
0.001
2
7mer
594-610
0.001
1
XLOC_000567
hsa-miR-149-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001281
Biotype: transcript isomorph
Gene id: XLOC_000567
Gene Name: XLOC_000567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-139
0.027
1
7mer
108-135
0.012
1
LINC01224
hsa-miR-149-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-531
0.018
0
7mer
1295-1306
0.009
0
6mer
913-935
0.008
1
6mer
778-788
0.004
0
FAM223A
hsa-miR-149-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000593346
Biotype: lincRNA
Gene id: ENSG00000272681
Gene Name: FAM223A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-642
0.020
0
6mer
633-652
0.015
1
6mer
583-600
0.004
0
CTA-414D7.1
hsa-miR-149-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6295-6313
0.005
1
8mer
2431-2450
0.005
1
8mer
622-649
0.004
1
7mer
654-673
0.004
1
7mer
622-639
0.003
1
6mer
6164-6177
0.002
0
6mer
8907-8928
0.002
0
8mer
5024-5046
0.001
0
6mer
2802-2815
0.001
0
6mer
7895-7913
0.001
1
6mer
3128-3142
0.001
1
7mer
6383-6399
0.001
1
6mer
1904-1925
0.001
1
6mer
3296-3310
0.001
1
6mer
5332-5354
0.001
0
6mer
3636-3659
0.001
1
6mer
3482-3497
0.001
1
6mer
3155-3174
0.001
1
6mer
9563-9582
0.001
0
6mer
5162-5187
0.001
0
6mer
9828-9853
0.001
0
6mer
5197-5219
0.001
0
7mer
5024-5043
0.000
0
6mer
8064-8080
0.000
0
6mer
2525-2546
0.000
1
6mer
2443-2470
0.000
0
7mer
9608-9627
0.000
0
AC068039.4
hsa-miR-149-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
562-573
0.014
0
6mer
690-712
0.008
0
6mer
610-627
0.007
0
6mer
584-602
0.005
0
6mer
674-691
0.004
0
LINC00936
hsa-miR-149-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000605386
Biotype: lincRNA
Gene id: ENSG00000271614
Gene Name: LINC00936
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-645
0.026
8
6mer
258-281
0.006
6
6mer
289-305
0.003
6
7mer
920-943
0.003
3
LINC01276
hsa-miR-149-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000416951
Biotype: lincRNA
Gene id: ENSG00000226917
Gene Name: LINC01276
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
633-654
0.017
5
7mer
266-286
0.009
2
8mer
397-416
0.005
1
7mer
511-526
0.004
1
6mer
242-262
0.004
0
XLOC_013562
hsa-miR-149-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028216
Biotype: transcript isomorph
Gene id: XLOC_013562
Gene Name: XLOC_013562
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-132
0.026
0
7mer
215-239
0.013
1
RP11-329J18.3
hsa-miR-149-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563757
Biotype: antisense
Gene id: ENSG00000260744
Gene Name: RP11-329J18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
288-313
0.029
0
6mer
416-439
0.007
2
6mer
291-309
0.002
0
RP11-6F2.5
hsa-miR-149-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469196
Biotype: lincRNA
Gene id: ENSG00000241544
Gene Name: RP11-6F2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
983-1005
0.015
4
7mer
253-275
0.010
1
6mer
900-917
0.005
4
6mer
112-130
0.004
1
7mer
1199-1225
0.004
1
LINC01134
hsa-miR-149-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439488
Biotype: lincRNA
Gene id: ENSG00000236423
Gene Name: LINC01134
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1878-1895
0.019
0
7mer
1729-1753
0.007
1
7mer
1420-1443
0.003
0
7mer
1242-1263
0.002
1
7mer
1871-1892
0.002
0
6mer
682-698
0.002
1
6mer
508-524
0.002
1
6mer
515-540
0.001
1
CTB-55O6.12
hsa-miR-149-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588658
Biotype: antisense
Gene id: ENSG00000267169
Gene Name: CTB-55O6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-66
0.034
1
7mer
72-91
0.003
1
6mer
455-477
0.002
1
FZD10-AS1
hsa-miR-149-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505807
Biotype: lincRNA
Gene id: ENSG00000250208
Gene Name: FZD10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9465-9485
0.012
0
9mer
7865-7890
0.008
0
7mer
10153-10179
0.003
0
6mer
9710-9731
0.003
0
6mer
8948-8970
0.002
1
6mer
9689-9714
0.002
0
8mer
9217-9240
0.002
Not Conserved
6mer
9469-9495
0.002
1
6mer
5682-5692
0.001
2
6mer
9208-9226
0.001
1
6mer
6705-6724
0.001
0
7mer
6421-6436
0.001
0
6mer
1826-1848
0.001
1
6mer
1858-1876
0.001
0
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