LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
CTB-22K21.2
hsa-miR-149-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000502435
Biotype: antisense
Gene id: ENSG00000251239
Gene Name: CTB-22K21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-388
0.030
1
6mer
402-424
0.004
1
7mer
370-388
0.003
1
6mer
316-332
0.002
1
RP4-644L1.2
hsa-miR-149-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428495
Biotype: lincRNA
Gene id: ENSG00000229771
Gene Name: RP4-644L1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1384-1406
0.023
7
7mer
619-640
0.011
1
7mer
787-812
0.005
1
APCDD1L-AS1
hsa-miR-149-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000427140
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-81
0.036
0
8mer
52-78
0.003
0
XLOC_013263
hsa-miR-149-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027223
Biotype: transcript isomorph
Gene id: XLOC_013263
Gene Name: XLOC_013263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2215-2237
0.007
1
6mer
3082-3101
0.006
0
6mer
528-550
0.006
0
6mer
3044-3066
0.005
0
6mer
2910-2932
0.004
0
6mer
1148-1169
0.004
0
6mer
1017-1034
0.003
0
7mer
2088-2104
0.003
0
6mer
1362-1379
0.002
0
CTD-2210P24.1
hsa-miR-149-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000614989
Biotype: lincRNA
Gene id: ENSG00000254519
Gene Name: CTD-2210P24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-405
0.023
1
7mer
222-243
0.008
2
7mer
388-402
0.004
1
RP11-445F6.2
hsa-miR-149-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441249
Biotype: antisense
Gene id: ENSG00000226571
Gene Name: RP11-445F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
595-612
0.040
1
RP11-139I14.2
hsa-miR-149-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451362
Biotype: lincRNA
Gene id: ENSG00000237390
Gene Name: RP11-139I14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4571-4592
0.019
6
7mer
3062-3076
0.003
5
8mer+mismatch
356-377
0.002
0
6mer
605-631
0.002
1
6mer
3495-3518
0.002
2
6mer
5304-5329
0.002
0
6mer
2927-2940
0.001
1
6mer
356-373
0.001
1
6mer
1188-1206
0.001
1
7mer
759-785
0.001
0
6mer
3881-3899
0.001
0
7mer
3533-3550
0.001
1
6mer
2266-2288
0.001
1
6mer
2613-2626
0.001
5
7mer
3127-3141
0.001
1
6mer
1750-1771
0.001
Not Conserved
MEG3
hsa-miR-149-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-447
0.036
3
6mer
1382-1406
0.004
3
PRKCQ-AS1
hsa-miR-149-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000624974
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-841
0.033
1
6mer
480-504
0.003
0
6mer
832-854
0.002
1
6mer
691-717
0.002
0
AC012594.1
hsa-miR-149-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600489
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
533-549
0.021
0
9mer
573-590
0.009
0
6mer
517-542
0.006
1
7mer
577-592
0.004
Not Conserved
RP1-310O13.7
hsa-miR-149-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449519
Biotype: antisense
Gene id: ENSG00000226239
Gene Name: RP1-310O13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-261
0.019
1
8mer
956-979
0.013
1
6mer
445-467
0.003
0
7mer
1206-1225
0.002
0
6mer
847-866
0.002
1
6mer
608-622
0.001
1
RP1-78B3.1
hsa-miR-149-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625157
Biotype: lincRNA
Gene id: ENSG00000279652
Gene Name: RP1-78B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-574
0.021
1
6mer
7788-7804
0.004
1
6mer
3800-3825
0.002
3
6mer
5745-5770
0.002
1
6mer
7747-7772
0.001
0
6mer
5125-5139
0.001
1
6mer
6290-6315
0.001
1
6mer
5351-5367
0.001
4
6mer
2177-2196
0.001
1
6mer
6123-6148
0.001
0
6mer
3305-3320
0.001
0
6mer
2312-2331
0.001
1
6mer
3391-3410
0.001
1
6mer
2330-2344
0.000
1
6mer
6158-6180
0.000
Not Conserved
6mer
2433-2457
0.000
Not Conserved
AC108462.1
hsa-miR-149-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457467
Biotype: antisense
Gene id: ENSG00000233553
Gene Name: AC108462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-429
0.023
1
7mer
46-64
0.009
0
6mer
581-603
0.007
1
RP5-1014D13.2
hsa-miR-149-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11606-11631
0.004
3
6mer
389-411
0.004
1
9mer
11560-11580
0.003
3
6mer
18892-18918
0.002
1
6mer
7875-7894
0.002
3
6mer
4371-4381
0.002
1
6mer
15078-15093
0.002
1
6mer
12834-12850
0.002
1
6mer
4581-4591
0.001
1
6mer
9014-9036
0.001
1
6mer
14447-14469
0.001
1
6mer
9660-9683
0.001
1
6mer
16445-16467
0.001
1
6mer
8719-8733
0.001
Not Conserved
6mer
14589-14604
0.001
0
6mer
14252-14270
0.001
1
6mer
11528-11549
0.001
2
6mer
3726-3744
0.001
0
6mer
5328-5353
0.001
0
6mer
18189-18214
0.001
0
6mer
2559-2574
0.001
Not Conserved
6mer
14719-14735
0.001
0
6mer
14289-14299
0.001
0
6mer
10873-10893
0.001
0
6mer
5503-5520
0.001
0
6mer
2848-2872
0.001
Not Conserved
6mer
4032-4057
0.001
0
6mer
13006-13026
0.001
0
6mer
12980-12994
0.001
1
6mer
5363-5385
0.000
0
6mer
2393-2408
0.000
0
6mer
3896-3912
0.000
0
6mer
4064-4089
0.000
0
6mer
10883-10905
0.000
0
6mer
2863-2888
0.000
Not Conserved
RP11-408H20.3
hsa-miR-149-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582307
Biotype: antisense
Gene id: ENSG00000263698
Gene Name: RP11-408H20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
797-819
0.037
0
6mer
182-202
0.002
1
CTD-3105H18.13
hsa-miR-149-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1515-1542
0.022
1
6mer
137-152
0.017
1
LINC00861
hsa-miR-149-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522865
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-307
0.039
0
XLOC_011576
hsa-miR-149-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023206
Biotype: transcript isomorph
Gene id: XLOC_011576
Gene Name: XLOC_011576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1377-1392
0.028
2
7mer
1784-1803
0.005
0
7mer
1804-1824
0.004
1
6mer
906-926
0.001
1
6mer
915-934
0.001
0
AC005324.6
hsa-miR-149-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000434017
Biotype: antisense
Gene id: ENSG00000233002
Gene Name: AC005324.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-226
0.029
1
6mer
673-688
0.010
1
RP11-290F5.2
hsa-miR-149-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_040108.1
Biotype: lincRNA
Gene id: NR_040108.1 (gene)
Gene Name: RP11-290F5.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
527-551
0.016
0
7mer
134-153
0.010
0
7mer
531-551
0.006
0
7mer
1777-1803
0.006
1
6mer
1796-1817
0.002
0
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