LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
MIR497HG
hsa-miR-149-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572453
Biotype: antisense
Gene id: ENSG00000267532
Gene Name: MIR497HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-72
0.030
9
7mer
3714-3735
0.007
4
7mer
996-1018
0.003
0
7mer
1364-1379
0.001
0
MIR4458HG
hsa-miR-149-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606459
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2772-2798
0.029
1
6mer
358-378
0.004
2
6mer
2251-2269
0.003
1
6mer
1897-1917
0.002
0
7mer
449-469
0.001
1
6mer
2333-2355
0.001
1
RP11-44F14.8
hsa-miR-149-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1537-1558
0.020
1
7mer
792-814
0.015
0
6mer
440-464
0.006
0
CTD-2311M21.3
hsa-miR-149-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568496
Biotype: antisense
Gene id: ENSG00000261821
Gene Name: CTD-2311M21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3885-3901
0.013
0
8mer
4462-4486
0.006
1
7mer
2162-2181
0.005
0
7mer
3189-3208
0.003
2
6mer
552-574
0.003
0
6mer
4083-4100
0.002
1
6mer
693-709
0.002
0
6mer
4089-4113
0.001
1
6mer
1098-1121
0.001
3
6mer
1473-1497
0.001
0
6mer
3438-3464
0.001
0
7mer
994-1017
0.001
0
6mer
1192-1213
0.001
1
6mer
1620-1643
0.001
Not Conserved
6mer
3280-3296
0.000
2
6mer
3311-3325
0.000
1
8mer
1229-1250
0.000
Not Conserved
RP11-440L14.3
hsa-miR-149-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000568585
Biotype: lincRNA
Gene id: ENSG00000260262
Gene Name: RP11-440L14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
348-371
0.019
1
6mer
388-407
0.014
1
6mer
470-496
0.007
0
AC012594.1
hsa-miR-149-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609459
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-807
0.021
0
9mer
831-848
0.009
0
6mer
775-800
0.006
1
7mer
835-850
0.004
Not Conserved
LINC00861
hsa-miR-149-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517869
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-92
0.040
0
CTD-2509G16.5
hsa-miR-149-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553754
Biotype: lincRNA
Gene id: ENSG00000258760
Gene Name: CTD-2509G16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-37
0.032
0
6mer
177-199
0.009
4
PRKCQ-AS1
hsa-miR-149-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609346
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-169
0.037
1
6mer
160-182
0.003
1
RP11-73G16.1
hsa-miR-149-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515329
Biotype: lincRNA
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2324-2347
0.034
1
7mer
108-129
0.006
1
RP4-760C5.3
hsa-miR-149-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448580
Biotype: lincRNA
Gene id: ENSG00000231081
Gene Name: RP4-760C5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-320
0.033
1
6mer
353-376
0.007
0
CTA-984G1.5
hsa-miR-149-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433125
Biotype: antisense
Gene id: ENSG00000237015
Gene Name: CTA-984G1.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-85
0.036
1
6mer
242-259
0.004
1
RP11-115H13.1
hsa-miR-149-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000620503
Biotype: sense_intronic
Gene id: ENSG00000273906
Gene Name: RP11-115H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1989-2011
0.021
1
6mer
163-182
0.008
0
8mer
1989-2008
0.008
0
6mer
829-853
0.003
0
RP11-379B18.5
hsa-miR-149-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608488
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-76
0.034
4
6mer
271-288
0.004
1
6mer
405-427
0.001
Not Conserved
RP4-739H11.3
hsa-miR-149-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440100
Biotype: lincRNA
Gene id: ENSG00000237899
Gene Name: RP4-739H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-196
0.040
3
RP11-539L10.2
hsa-miR-149-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499502
Biotype: lincRNA
Gene id: ENSG00000246526
Gene Name: RP11-539L10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1191
0.031
1
6mer
1392-1409
0.006
1
6mer
417-436
0.002
0
6mer
757-780
0.002
0
XLOC_008186
hsa-miR-149-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017518
Biotype: transcript isomorph
Gene id: XLOC_008186
Gene Name: XLOC_008186
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-837
0.038
Not Conserved
6mer
816-837
0.002
Not Conserved
MEG3
hsa-miR-149-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046470.2
Biotype: lincRNA
Gene id: NR_046470.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.037
3
6mer
1473-1497
0.003
3
RP3-468B3.2
hsa-miR-149-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451317
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-555
0.010
1
8mer
821-838
0.009
1
6mer
47-54
0.005
0
7mer
3318-3337
0.004
1
6mer
2216-2233
0.004
6
6mer
791-813
0.002
1
7mer
1771-1794
0.002
1
6mer
2644-2665
0.001
4
7mer
1969-1989
0.001
2
8mer
812-835
0.001
1
6mer
1793-1816
0.001
1
8mer+mismatch
1969-1989
0.000
2
6mer
1805-1824
0.000
0
RP11-49I11.1
hsa-miR-149-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568654
Biotype: antisense
Gene id: ENSG00000260552
Gene Name: RP11-49I11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-96
0.037
1
6mer
80-105
0.003
2
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