LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-149-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_013194
hsa-miR-149-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027152
Biotype: transcript isomorph
Gene id: XLOC_013194
Gene Name: XLOC_013194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
578-598
0.042
0
CTD-2201G3.1
hsa-miR-149-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510381
Biotype: antisense
Gene id: ENSG00000232633
Gene Name: CTD-2201G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1473-1497
0.020
0
7mer
183-201
0.008
0
7mer
957-980
0.005
1
6mer
1404-1420
0.003
1
6mer
683-704
0.003
1
6mer
274-298
0.002
1
RP4-671O14.6
hsa-miR-149-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6684-6699
0.007
Not Conserved
6mer
454-477
0.004
1
6mer
14207-14223
0.004
0
6mer
194-210
0.004
1
7mer
14056-14079
0.003
Not Conserved
6mer
13872-13891
0.003
1
8mer+wobble
10227-10248
0.002
1
6mer
11772-11797
0.001
1
7mer
7553-7580
0.001
1
6mer
13027-13042
0.001
1
8mer+mismatch
6289-6308
0.001
1
6mer
5613-5633
0.001
0
6mer
3279-3296
0.001
Not Conserved
7mer
12500-12516
0.001
0
8mer
12500-12519
0.001
Not Conserved
6mer
10074-10098
0.001
1
7mer
5627-5647
0.001
1
6mer
10227-10245
0.001
1
6mer
3798-3821
0.001
1
6mer
8740-8757
0.001
1
6mer
10284-10300
0.001
Not Conserved
6mer
12889-12909
0.001
0
6mer
12859-12877
0.001
Not Conserved
6mer
3651-3671
0.000
Not Conserved
RP11-70F11.11
hsa-miR-149-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552768
Biotype: lincRNA
Gene id: ENSG00000258135
Gene Name: RP11-70F11.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-78
0.041
2
MEG3
hsa-miR-149-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424076
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-469
0.041
3
RP11-486O12.2
hsa-miR-149-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000498967
Biotype: lincRNA
Gene id: ENSG00000247373
Gene Name: RP11-486O12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1527-1550
0.022
0
6mer
7299-7315
0.002
1
6mer
3592-3611
0.002
0
6mer
1797-1819
0.002
0
6mer
5440-5454
0.001
0
6mer
7199-7221
0.001
1
6mer
4259-4284
0.001
0
6mer
7208-7235
0.001
0
6mer
2244-2260
0.001
Not Conserved
6mer
4835-4854
0.001
0
6mer
6231-6244
0.001
1
6mer
5681-5706
0.001
0
6mer
3478-3496
0.001
0
6mer
6005-6021
0.001
1
6mer
2116-2132
0.001
0
6mer
3809-3826
0.001
0
6mer
4700-4716
0.001
0
6mer
3982-4000
0.001
0
6mer
3950-3966
0.001
0
6mer
6172-6186
0.000
1
AC012594.1
hsa-miR-149-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608325
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
670-686
0.021
0
9mer
710-727
0.009
0
6mer
654-679
0.006
1
7mer
714-729
0.003
Not Conserved
6mer
377-401
0.003
1
FLVCR1-AS1
hsa-miR-149-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000356684
Biotype: lincRNA
Gene id: ENSG00000198468
Gene Name: FLVCR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-326
0.012
0
7mer
214-231
0.006
0
7mer
808-833
0.005
1
6mer
457-471
0.004
0
6mer
1974-1990
0.003
0
6mer
2103-2119
0.003
0
6mer
444-464
0.003
0
6mer
1374-1393
0.003
1
6mer
2135-2160
0.002
0
RP11-1143G9.5
hsa-miR-149-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-323
0.026
1
6mer
450-467
0.004
1
6mer
1483-1502
0.003
1
6mer
2449-2476
0.003
1
6mer
616-634
0.002
0
6mer
584-606
0.002
Not Conserved
6mer
1315-1340
0.001
0
6mer
1347-1361
0.001
0
XLOC_013824
hsa-miR-149-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028456
Biotype: transcript isomorph
Gene id: XLOC_013824
Gene Name: XLOC_013824
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
119-142
0.014
2
7mer
665-681
0.010
0
7mer
438-449
0.007
1
6mer
181-206
0.006
2
6mer
776-800
0.005
1
RP5-1198O20.4
hsa-miR-149-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609027
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
609-631
0.024
1
7mer
764-779
0.009
1
7mer
178-199
0.005
0
6mer
609-627
0.003
0
MEG3
hsa-miR-149-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000520714
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-477
0.041
3
RP3-388M5.9
hsa-miR-149-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000564696
Biotype: antisense
Gene id: ENSG00000261251
Gene Name: RP3-388M5.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1059-1078
0.038
1
6mer
878-894
0.003
2
CTD-2246P4.1
hsa-miR-149-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585863
Biotype: lincRNA
Gene id: ENSG00000267065
Gene Name: CTD-2246P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
823-845
0.016
1
6mer
2180-2196
0.005
1
6mer
316-330
0.004
1
6mer
2042-2062
0.004
0
6mer
173-195
0.003
0
6mer
146-164
0.002
0
6mer
715-731
0.002
1
6mer
582-598
0.002
0
6mer
548-566
0.002
0
RAD51L3-RFFL
hsa-miR-149-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1926-1947
0.024
1
7mer
367-381
0.010
0
7mer
2547-2567
0.003
3
7mer
1127-1149
0.002
1
6mer
1143-1162
0.001
Not Conserved
6mer
2447-2461
0.001
2
6mer
1567-1581
0.001
0
RP11-203J24.8
hsa-miR-149-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000591408
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
776-802
0.020
2
8mer
279-302
0.016
2
7mer
348-372
0.004
2
6mer
258-275
0.001
0
CTBP1-AS2
hsa-miR-149-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
732-745
0.013
1
7mer
949-964
0.011
1
6mer
2056-2079
0.009
1
6mer
1243-1253
0.008
1
RP11-295G24.5
hsa-miR-149-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451318
Biotype: sense_intronic
Gene id: ENSG00000224992
Gene Name: RP11-295G24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
465-491
0.023
1
8mer
72-93
0.018
Not Conserved
RP11-434D2.3
hsa-miR-149-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591705
Biotype: lincRNA
Gene id: ENSG00000267075
Gene Name: RP11-434D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4547-4568
0.012
0
8mer
3192-3217
0.006
0
8mer+mismatch
4552-4573
0.004
0
7mer
3808-3830
0.003
0
6mer
4555-4580
0.003
0
7mer
2072-2093
0.003
0
6mer
4475-4490
0.002
0
6mer
4547-4565
0.002
0
6mer
3935-3959
0.002
Not Conserved
6mer
2535-2561
0.001
1
6mer
3067-3084
0.001
0
6mer
2252-2270
0.001
1
LINC00937
hsa-miR-149-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544461
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2783-2797
0.022
Not Conserved
8mer
2083-2097
0.017
0
6mer
1659-1683
0.001
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept