LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012515
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025694
Biotype: transcript isomorph
Gene id: XLOC_012515
Gene Name: XLOC_012515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2645-2668
0.015
1
7mer
628-650
0.014
0
6mer
2922-2944
0.005
1
6mer
2439-2458
0.003
1
6mer
2935-2954
0.003
1
6mer
2632-2642
0.002
0
XLOC_009403
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019600
Biotype: transcript isomorph
Gene id: XLOC_009403
Gene Name: XLOC_009403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2-23
0.042
2
ITGA9-AS1
hsa-miR-149-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439246
Biotype: retained_intron
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2506-2527
0.012
Not Conserved
8mer
868-883
0.011
1
7mer
2490-2507
0.004
1
6mer
3106-3131
0.003
0
7mer
1246-1269
0.003
0
6mer
2020-2041
0.002
1
6mer
2603-2617
0.002
0
6mer
2329-2348
0.002
0
6mer
1813-1829
0.002
1
6mer
2498-2513
0.001
2
6mer
1715-1734
0.001
1
RP5-1198O20.4
hsa-miR-149-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437643
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-605
0.033
1
7mer
176-197
0.005
0
6mer
583-601
0.004
0
HSD52
hsa-miR-149-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624582
Biotype: lincRNA
Gene id: ENSG00000224609
Gene Name: HSD52
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
711-727
0.023
2
7mer
246-268
0.019
8
AC004156.3
hsa-miR-149-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591866
Biotype: lincRNA
Gene id: ENSG00000267666
Gene Name: AC004156.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-212
0.036
0
7mer
1568-1595
0.005
0
6mer
804-820
0.002
1
CTA-331P3.1
hsa-miR-149-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569685
Biotype: antisense
Gene id: ENSG00000260188
Gene Name: CTA-331P3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-623
0.032
1
6mer
506-526
0.006
2
6mer
1267-1291
0.004
1
AC003102.3
hsa-miR-149-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588097
Biotype: antisense
Gene id: ENSG00000267750
Gene Name: AC003102.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4832-4850
0.012
0
7mer
760-786
0.008
1
7mer
730-751
0.004
1
6mer
170-186
0.003
1
6mer
304-326
0.003
0
6mer
499-523
0.003
1
7mer
914-937
0.003
1
6mer
1135-1151
0.002
1
6mer
3187-3203
0.002
0
7mer
1962-1987
0.001
0
6mer
1491-1504
0.001
0
6mer
3052-3077
0.001
0
RP11-36B6.1
hsa-miR-149-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000604514
Biotype: lincRNA
Gene id: ENSG00000271522
Gene Name: RP11-36B6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1289-1309
0.036
1
6mer
1270-1295
0.006
1
DGCR5
hsa-miR-149-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424407
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
680-692
0.042
0
RP1-191J18.66
hsa-miR-149-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606070
Biotype: antisense
Gene id: ENSG00000272476
Gene Name: RP1-191J18.66
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-829
0.028
9
6mer
117-137
0.007
6
7mer
907-932
0.003
1
7mer
926-944
0.002
0
6mer
696-719
0.001
6
6mer
2073-2092
0.001
Not Conserved
FAM66C
hsa-miR-149-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000456135
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
964-986
0.016
1
6mer
1100-1117
0.014
1
7mer
264-288
0.009
0
6mer
1132-1149
0.003
Not Conserved
MEG3
hsa-miR-149-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000429159
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.038
3
6mer
1329-1353
0.004
3
VIPR1-AS1
hsa-miR-149-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452639
Biotype: antisense
Gene id: ENSG00000232354
Gene Name: VIPR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1296-1318
0.016
0
7mer
1085-1106
0.008
1
8mer
678-695
0.008
5
7mer
325-349
0.004
1
6mer
1212-1229
0.003
2
6mer
806-825
0.002
5
6mer
1145-1163
0.001
1
MEG3
hsa-miR-149-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046472.1
Biotype: lincRNA
Gene id: NR_046472.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.038
3
6mer
1367-1391
0.003
3
RP11-756H20.1
hsa-miR-149-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564199
Biotype: lincRNA
Gene id: ENSG00000260192
Gene Name: RP11-756H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-802
0.040
1
6mer
294-307
0.002
0
MEG3
hsa-miR-149-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046467.1
Biotype: lincRNA
Gene id: NR_046467.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.038
3
6mer
1481-1505
0.004
3
MEG3
hsa-miR-149-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000519709
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-461
0.039
3
6mer
1462-1486
0.003
3
MEG3
hsa-miR-149-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046469.1
Biotype: lincRNA
Gene id: NR_046469.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.038
3
6mer
1343-1367
0.003
3
MEG3
hsa-miR-149-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046464.1
Biotype: lincRNA
Gene id: NR_046464.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.038
3
6mer
1377-1401
0.003
3
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